JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:13 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1ah7a_.name2015-04-17 17:45 0 Job name flag file
[ ]jp_JpVeFO_.align2015-04-17 19:13 51KPSIBLAST alignment in FASTA format
[TXT]jp_JpVeFO_.als2015-04-17 19:13 2.6KAlscript command file for PS/PDF output
[ ]jp_JpVeFO_.blast.gz2015-04-17 19:13 142KCompressed PSIBLAST output file
[TXT]jp_JpVeFO_.coils.csv2015-04-17 19:13 1.5KCOILS output in CSV format
[ ]jp_JpVeFO_.coilseq.lupas_142015-04-17 19:13 10KCOILS output, window length 14
[ ]jp_JpVeFO_.coilseq.lupas_212015-04-17 19:13 10KCOILS output, window length 21
[ ]jp_JpVeFO_.coilseq.lupas_282015-04-17 19:13 10KCOILS output, window length 28
[ ]jp_JpVeFO_.concise2015-04-17 19:13 108KPrediction: coiled-coil, solvent, alignment
[ ]jp_JpVeFO_.concise.blc2015-04-17 19:13 54KBLC format prediction and alignment data
[ ]jp_JpVeFO_.concise.fasta2015-04-17 19:13 53KPrediction: coiled-coil, solvent, alignment
[ ]jp_JpVeFO_.concise.pdf2015-04-17 19:13 344KPDF prediction and alignment data
[ ]jp_JpVeFO_.concise.ps2015-04-17 19:13 6.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_JpVeFO_.fasta2015-04-17 19:09 261 Input query sequence in FASTA format
[ ]jp_JpVeFO_.full_MSA.fasta2015-04-17 19:13 431KFull MSA before JPred filters in FASTA
[TXT]jp_JpVeFO_.full_MSA.fasta.noGaps.html2015-04-17 19:13 122KFull MSA before JPred filters in FASTA
[TXT]jp_JpVeFO_.full_MSA.fasta.withGaps.html2015-04-17 19:13 1.6MFull MSA before JPred filters in FASTA
[ ]jp_JpVeFO_.hmm2015-04-17 19:13 46KHHMer2 profile of the alignment
[TXT]jp_JpVeFO_.html2015-04-17 19:13 112KHTML prediction and alignment data
[ ]jp_JpVeFO_.input2015-04-17 17:45 252 Raw input data for analysis
[ ]jp_JpVeFO_.jalview2015-04-17 19:13 5.8KJalview annotation file for alignment
[ ]jp_JpVeFO_.jnet2015-04-17 19:13 9.0KJnet secondary structure output
[TXT]jp_JpVeFO_.profile2015-04-17 19:12 39KPSIBLAST profile from alignment
[ ]jp_JpVeFO_.pssm2015-04-17 19:13 53KPSIBLAST PSSM for Jnet
[TXT]jp_JpVeFO_.results.html2016-02-15 12:16 104KJPred results page
[TXT]jp_JpVeFO_.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_JpVeFO_.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_JpVeFO_.seq2015-04-17 17:45 261 Sequence data file
[TXT]jp_JpVeFO_.simple.html2015-04-17 19:13 1.6KBrief HTML: sequence and prediction only
[TXT]jp_JpVeFO_.svg.html2015-04-17 19:13 96KJalview SVG summary of results
[ ]jp_JpVeFO_.tar.gz2015-04-17 19:13 771KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.