JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:15 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1ayoa_.name2015-04-17 17:45 0 Job name flag file
[ ]jp_vSKn9iq.align2015-04-17 19:15 118KPSIBLAST alignment in FASTA format
[TXT]jp_vSKn9iq.als2015-04-17 19:15 2.7KAlscript command file for PS/PDF output
[ ]jp_vSKn9iq.blast.gz2015-04-17 19:13 1.0MCompressed PSIBLAST output file
[TXT]jp_vSKn9iq.coils.csv2015-04-17 19:15 810 COILS output in CSV format
[ ]jp_vSKn9iq.coilseq.lupas_142015-04-17 19:15 5.5KCOILS output, window length 14
[ ]jp_vSKn9iq.coilseq.lupas_212015-04-17 19:15 5.5KCOILS output, window length 21
[ ]jp_vSKn9iq.coilseq.lupas_282015-04-17 19:15 5.5KCOILS output, window length 28
[ ]jp_vSKn9iq.concise2015-04-17 19:15 229KPrediction: coiled-coil, solvent, alignment
[ ]jp_vSKn9iq.concise.blc2015-04-17 19:15 118KBLC format prediction and alignment data
[ ]jp_vSKn9iq.concise.fasta2015-04-17 19:15 119KPrediction: coiled-coil, solvent, alignment
[ ]jp_vSKn9iq.concise.pdf2015-04-17 19:15 781KPDF prediction and alignment data
[ ]jp_vSKn9iq.concise.ps2015-04-17 19:15 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_vSKn9iq.fasta2015-04-17 19:10 144 Input query sequence in FASTA format
[ ]jp_vSKn9iq.full_MSA.fasta2015-04-17 19:13 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_vSKn9iq.full_MSA.fasta.noGaps.html2015-04-17 19:15 482KFull MSA before JPred filters in FASTA
[TXT]jp_vSKn9iq.full_MSA.fasta.withGaps.html2015-04-17 19:15 6.3MFull MSA before JPred filters in FASTA
[ ]jp_vSKn9iq.hmm2015-04-17 19:15 24KHHMer2 profile of the alignment
[TXT]jp_vSKn9iq.html2015-04-17 19:15 283KHTML prediction and alignment data
[ ]jp_vSKn9iq.input2015-04-17 17:45 137 Raw input data for analysis
[ ]jp_vSKn9iq.jalview2015-04-17 19:15 3.4KJalview annotation file for alignment
[ ]jp_vSKn9iq.jnet2015-04-17 19:15 4.8KJnet secondary structure output
[TXT]jp_vSKn9iq.profile2015-04-17 19:13 21KPSIBLAST profile from alignment
[ ]jp_vSKn9iq.pssm2015-04-17 19:15 28KPSIBLAST PSSM for Jnet
[TXT]jp_vSKn9iq.results.html2016-02-15 12:16 61KJPred results page
[TXT]jp_vSKn9iq.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_vSKn9iq.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_vSKn9iq.seq2015-04-17 17:45 144 Sequence data file
[TXT]jp_vSKn9iq.simple.html2015-04-17 19:15 1.4KBrief HTML: sequence and prediction only
[TXT]jp_vSKn9iq.svg.html2015-04-17 19:15 53KJalview SVG summary of results
[ ]jp_vSKn9iq.tar.gz2015-04-17 19:15 2.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.