JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_g7IrjC7.input2015-04-17 18:59 109 Raw input data for analysis
[ ]jp_g7IrjC7.seq2015-04-17 18:59 116 Sequence data file
[TXT]d1b79a_.name2015-04-17 18:59 0 Job name flag file
[ ]jp_g7IrjC7.fasta2015-04-17 21:09 116 Input query sequence in FASTA format
[TXT]jp_g7IrjC7.profile2015-04-17 21:11 17KPSIBLAST profile from alignment
[ ]jp_g7IrjC7.blast.gz2015-04-17 21:14 1.4MCompressed PSIBLAST output file
[ ]jp_g7IrjC7.full_MSA.fasta2015-04-17 21:14 1.9MFull MSA before JPred filters in FASTA
[ ]jp_g7IrjC7.align2015-04-17 21:14 113KPSIBLAST alignment in FASTA format
[ ]jp_g7IrjC7.pssm2015-04-17 21:14 22KPSIBLAST PSSM for Jnet
[ ]jp_g7IrjC7.hmm2015-04-17 21:14 19KHHMer2 profile of the alignment
[ ]jp_g7IrjC7.jnet2015-04-17 21:14 3.8KJnet secondary structure output
[ ]jp_g7IrjC7.coilseq.lupas_212015-04-17 21:14 4.3KCOILS output, window length 21
[ ]jp_g7IrjC7.coilseq.lupas_142015-04-17 21:14 4.3KCOILS output, window length 14
[ ]jp_g7IrjC7.coilseq.lupas_282015-04-17 21:14 4.3KCOILS output, window length 28
[TXT]jp_g7IrjC7.coils.csv2015-04-17 21:14 642 COILS output in CSV format
[ ]jp_g7IrjC7.concise2015-04-17 21:14 218KPrediction: coiled-coil, solvent, alignment
[TXT]jp_g7IrjC7.html2015-04-17 21:14 307KHTML prediction and alignment data
[TXT]jp_g7IrjC7.simple.html2015-04-17 21:14 1.2KBrief HTML: sequence and prediction only
[ ]jp_g7IrjC7.jalview2015-04-17 21:14 2.9KJalview annotation file for alignment
[ ]jp_g7IrjC7.concise.fasta2015-04-17 21:14 114KPrediction: coiled-coil, solvent, alignment
[ ]jp_g7IrjC7.concise.blc2015-04-17 21:14 113KBLC format prediction and alignment data
[TXT]jp_g7IrjC7.als2015-04-17 21:14 2.1KAlscript command file for PS/PDF output
[ ]jp_g7IrjC7.concise.ps2015-04-17 21:14 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_g7IrjC7.concise.pdf2015-04-17 21:14 764KPDF prediction and alignment data
[TXT]jp_g7IrjC7.full_MSA.fasta.withGaps.html2015-04-17 21:14 9.2MFull MSA before JPred filters in FASTA
[TXT]jp_g7IrjC7.full_MSA.fasta.noGaps.html2015-04-17 21:14 881KFull MSA before JPred filters in FASTA
[TXT]jp_g7IrjC7.svg.html2015-04-17 21:14 43KJalview SVG summary of results
[TXT]LOG2015-04-17 21:15 4.7KJPred server log file
[ ]jp_g7IrjC7.tar.gz2015-04-17 21:15 3.4MArchive containing complete results
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]jp_g7IrjC7.results.html2016-02-15 12:16 51KJPred results page
[TXT]jp_g7IrjC7.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_g7IrjC7.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.