A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 15:20 | 4.7K | JPred server log file |
| README | 2016-02-15 12:16 | 2.1K | Results file descriptions |
| d1bgfa_.name | 2015-04-17 15:18 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_dr8IN2r.align | 2015-04-17 15:20 | 23K | PSIBLAST alignment in FASTA format |
| jp_dr8IN2r.als | 2015-04-17 15:20 | 2.2K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_dr8IN2r.blast.gz | 2015-04-17 15:20 | 120K | Compressed PSIBLAST output file |
| jp_dr8IN2r.coils.csv | 2015-04-17 15:20 | 774 | COILS output in CSV format |
| jp_dr8IN2r.coilseq.lupas_14 | 2015-04-17 15:20 | 5.2K | COILS output, window length 14 |
| jp_dr8IN2r.coilseq.lupas_21 | 2015-04-17 15:20 | 5.2K | COILS output, window length 21 |
| jp_dr8IN2r.coilseq.lupas_28 | 2015-04-17 15:20 | 5.2K | COILS output, window length 28 |
| jp_dr8IN2r.concise | 2015-04-17 15:20 | 48K | Prediction: coiled-coil, solvent, alignment |
| jp_dr8IN2r.concise.blc | 2015-04-17 15:20 | 24K | BLC format prediction and alignment data |
| jp_dr8IN2r.concise.fasta | 2015-04-17 15:20 | 24K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_dr8IN2r.concise.pdf | 2015-04-17 15:20 | 163K | PDF prediction and alignment data |
| jp_dr8IN2r.concise.ps | 2015-04-17 15:20 | 2.8M | Prediction: coiled-coil, solvent, alignment |
| jp_dr8IN2r.fasta | 2015-04-17 15:18 | 138 | Input query sequence in FASTA format |
| jp_dr8IN2r.full_MSA.fasta | 2015-04-17 15:20 | 181K | Full MSA before JPred filters in FASTA |
| jp_dr8IN2r.full_MSA.fasta.noGaps.html | 2015-04-17 15:20 | 115K | Full MSA before JPred filters in FASTA |
| jp_dr8IN2r.full_MSA.fasta.withGaps.html | 2015-04-17 15:20 | 836K | Full MSA before JPred filters in FASTA |
| jp_dr8IN2r.hmm | 2015-04-17 15:20 | 23K | HHMer2 profile of the alignment |
| jp_dr8IN2r.html | 2015-04-17 15:20 | 68K | HTML prediction and alignment data |
| jp_dr8IN2r.input | 2015-04-17 15:18 | 131 | Raw input data for analysis |
| jp_dr8IN2r.jalview | 2015-04-17 15:20 | 3.4K | Jalview annotation file for alignment |
| jp_dr8IN2r.jnet | 2015-04-17 15:20 | 4.6K | Jnet secondary structure output |
| jp_dr8IN2r.profile | 2015-04-17 15:19 | 20K | PSIBLAST profile from alignment |
| jp_dr8IN2r.pssm | 2015-04-17 15:20 | 27K | PSIBLAST PSSM for Jnet |
| jp_dr8IN2r.results.html | 2016-02-15 12:16 | 60K | JPred results page |
| jp_dr8IN2r.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_dr8IN2r.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_dr8IN2r.seq | 2015-04-17 15:18 | 138 | Sequence data file |
| jp_dr8IN2r.simple.html | 2015-04-17 15:20 | 1.2K | Brief HTML: sequence and prediction only |
![[TXT]](jp_dr8IN2r.svg.html) | jp_dr8IN2r.svg.html | 2015-04-17 15:20 | 52K | Jalview SVG summary of results |
| jp_dr8IN2r.tar.gz | 2015-04-17 15:20 | 425K | Archive containing complete results |
