JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:26 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1cfza_.name2015-04-17 15:18 0 Job name flag file
[ ]jp_OaG5Kww.align2015-04-17 15:26 234KPSIBLAST alignment in FASTA format
[TXT]jp_OaG5Kww.als2015-04-17 15:26 2.9KAlscript command file for PS/PDF output
[ ]jp_OaG5Kww.blast.gz2015-04-17 15:24 1.0MCompressed PSIBLAST output file
[TXT]jp_OaG5Kww.coils.csv2015-04-17 15:26 1.0KCOILS output in CSV format
[ ]jp_OaG5Kww.coilseq.lupas_142015-04-17 15:26 6.8KCOILS output, window length 14
[ ]jp_OaG5Kww.coilseq.lupas_212015-04-17 15:26 6.8KCOILS output, window length 21
[ ]jp_OaG5Kww.coilseq.lupas_282015-04-17 15:26 6.8KCOILS output, window length 28
[ ]jp_OaG5Kww.concise2015-04-17 15:26 455KPrediction: coiled-coil, solvent, alignment
[ ]jp_OaG5Kww.concise.blc2015-04-17 15:26 232KBLC format prediction and alignment data
[ ]jp_OaG5Kww.concise.fasta2015-04-17 15:26 236KPrediction: coiled-coil, solvent, alignment
[ ]jp_OaG5Kww.concise.pdf2015-04-17 15:26 1.7MPDF prediction and alignment data
[ ]jp_OaG5Kww.concise.ps2015-04-17 15:26 28MPrediction: coiled-coil, solvent, alignment
[ ]jp_OaG5Kww.fasta2015-04-17 15:18 177 Input query sequence in FASTA format
[ ]jp_OaG5Kww.full_MSA.fasta2015-04-17 15:24 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_OaG5Kww.full_MSA.fasta.noGaps.html2015-04-17 15:26 489KFull MSA before JPred filters in FASTA
[TXT]jp_OaG5Kww.full_MSA.fasta.withGaps.html2015-04-17 15:26 6.9MFull MSA before JPred filters in FASTA
[ ]jp_OaG5Kww.hmm2015-04-17 15:26 30KHHMer2 profile of the alignment
[TXT]jp_OaG5Kww.html2015-04-17 15:26 501KHTML prediction and alignment data
[ ]jp_OaG5Kww.input2015-04-17 15:18 169 Raw input data for analysis
[ ]jp_OaG5Kww.jalview2015-04-17 15:26 4.1KJalview annotation file for alignment
[ ]jp_OaG5Kww.jnet2015-04-17 15:26 6.0KJnet secondary structure output
[TXT]jp_OaG5Kww.profile2015-04-17 15:23 26KPSIBLAST profile from alignment
[ ]jp_OaG5Kww.pssm2015-04-17 15:26 35KPSIBLAST PSSM for Jnet
[TXT]jp_OaG5Kww.results.html2016-02-15 12:16 74KJPred results page
[TXT]jp_OaG5Kww.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_OaG5Kww.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_OaG5Kww.seq2015-04-17 15:18 177 Sequence data file
[TXT]jp_OaG5Kww.simple.html2015-04-17 15:26 1.5KBrief HTML: sequence and prediction only
[TXT]jp_OaG5Kww.svg.html2015-04-17 15:26 66KJalview SVG summary of results
[ ]jp_OaG5Kww.tar.gz2015-04-17 15:26 3.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.