JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:21 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1cuka1.name2015-04-17 15:55 0 Job name flag file
[ ]jp_xJxGJKi.align2015-04-17 16:21 52KPSIBLAST alignment in FASTA format
[TXT]jp_xJxGJKi.als2015-04-17 16:21 1.6KAlscript command file for PS/PDF output
[ ]jp_xJxGJKi.blast.gz2015-04-17 16:21 93KCompressed PSIBLAST output file
[TXT]jp_xJxGJKi.coils.csv2015-04-17 16:21 318 COILS output in CSV format
[ ]jp_xJxGJKi.coilseq.lupas_142015-04-17 16:21 2.0KCOILS output, window length 14
[ ]jp_xJxGJKi.coilseq.lupas_212015-04-17 16:21 2.0KCOILS output, window length 21
[ ]jp_xJxGJKi.coilseq.lupas_282015-04-17 16:21 2.0KCOILS output, window length 28
[ ]jp_xJxGJKi.concise2015-04-17 16:21 97KPrediction: coiled-coil, solvent, alignment
[ ]jp_xJxGJKi.concise.blc2015-04-17 16:21 52KBLC format prediction and alignment data
[ ]jp_xJxGJKi.concise.fasta2015-04-17 16:21 52KPrediction: coiled-coil, solvent, alignment
[ ]jp_xJxGJKi.concise.pdf2015-04-17 16:21 287KPDF prediction and alignment data
[ ]jp_xJxGJKi.concise.ps2015-04-17 16:21 5.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_xJxGJKi.fasta2015-04-17 16:14 61 Input query sequence in FASTA format
[ ]jp_xJxGJKi.full_MSA.fasta2015-04-17 16:21 134KFull MSA before JPred filters in FASTA
[TXT]jp_xJxGJKi.full_MSA.fasta.noGaps.html2015-04-17 16:21 201KFull MSA before JPred filters in FASTA
[TXT]jp_xJxGJKi.full_MSA.fasta.withGaps.html2015-04-17 16:21 642KFull MSA before JPred filters in FASTA
[ ]jp_xJxGJKi.hmm2015-04-17 16:21 9.0KHHMer2 profile of the alignment
[TXT]jp_xJxGJKi.html2015-04-17 16:21 211KHTML prediction and alignment data
[ ]jp_xJxGJKi.input2015-04-17 15:55 55 Raw input data for analysis
[ ]jp_xJxGJKi.jalview2015-04-17 16:21 1.8KJalview annotation file for alignment
[ ]jp_xJxGJKi.jnet2015-04-17 16:21 1.8KJnet secondary structure output
[TXT]jp_xJxGJKi.profile2015-04-17 16:18 8.1KPSIBLAST profile from alignment
[ ]jp_xJxGJKi.pssm2015-04-17 16:21 10KPSIBLAST PSSM for Jnet
[TXT]jp_xJxGJKi.results.html2016-02-15 12:16 30KJPred results page
[TXT]jp_xJxGJKi.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_xJxGJKi.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_xJxGJKi.seq2015-04-17 15:55 61 Sequence data file
[TXT]jp_xJxGJKi.simple.html2015-04-17 16:21 1.0KBrief HTML: sequence and prediction only
[TXT]jp_xJxGJKi.svg.html2015-04-17 16:21 22KJalview SVG summary of results
[ ]jp_xJxGJKi.tar.gz2015-04-17 16:21 555KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.