JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:08 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1cxzb_.name2015-04-17 15:05 0 Job name flag file
[ ]jp_vdSkPZh.align2015-04-17 15:08 14KPSIBLAST alignment in FASTA format
[TXT]jp_vdSkPZh.als2015-04-17 15:08 1.6KAlscript command file for PS/PDF output
[ ]jp_vdSkPZh.blast.gz2015-04-17 15:08 66KCompressed PSIBLAST output file
[TXT]jp_vdSkPZh.coils.csv2015-04-17 15:08 546 COILS output in CSV format
[ ]jp_vdSkPZh.coilseq.lupas_142015-04-17 15:08 3.6KCOILS output, window length 14
[ ]jp_vdSkPZh.coilseq.lupas_212015-04-17 15:08 3.6KCOILS output, window length 21
[ ]jp_vdSkPZh.coilseq.lupas_282015-04-17 15:08 3.6KCOILS output, window length 28
[ ]jp_vdSkPZh.concise2015-04-17 15:08 29KPrediction: coiled-coil, solvent, alignment
[ ]jp_vdSkPZh.concise.blc2015-04-17 15:08 15KBLC format prediction and alignment data
[ ]jp_vdSkPZh.concise.fasta2015-04-17 15:08 15KPrediction: coiled-coil, solvent, alignment
[ ]jp_vdSkPZh.concise.pdf2015-04-17 15:08 84KPDF prediction and alignment data
[ ]jp_vdSkPZh.concise.ps2015-04-17 15:08 1.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_vdSkPZh.fasta2015-04-17 15:05 100 Input query sequence in FASTA format
[ ]jp_vdSkPZh.full_MSA.fasta2015-04-17 15:08 98KFull MSA before JPred filters in FASTA
[TXT]jp_vdSkPZh.full_MSA.fasta.noGaps.html2015-04-17 15:08 106KFull MSA before JPred filters in FASTA
[TXT]jp_vdSkPZh.full_MSA.fasta.withGaps.html2015-04-17 15:08 438KFull MSA before JPred filters in FASTA
[ ]jp_vdSkPZh.hmm2015-04-17 15:08 16KHHMer2 profile of the alignment
[TXT]jp_vdSkPZh.html2015-04-17 15:08 49KHTML prediction and alignment data
[ ]jp_vdSkPZh.input2015-04-17 15:05 93 Raw input data for analysis
[ ]jp_vdSkPZh.jalview2015-04-17 15:08 2.6KJalview annotation file for alignment
[ ]jp_vdSkPZh.jnet2015-04-17 15:08 3.2KJnet secondary structure output
[TXT]jp_vdSkPZh.profile2015-04-17 15:07 14KPSIBLAST profile from alignment
[ ]jp_vdSkPZh.pssm2015-04-17 15:08 18KPSIBLAST PSSM for Jnet
[TXT]jp_vdSkPZh.results.html2016-02-15 12:16 44KJPred results page
[TXT]jp_vdSkPZh.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_vdSkPZh.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_vdSkPZh.seq2015-04-17 15:05 100 Sequence data file
[TXT]jp_vdSkPZh.simple.html2015-04-17 15:08 1.1KBrief HTML: sequence and prediction only
[TXT]jp_vdSkPZh.svg.html2015-04-17 15:08 35KJalview SVG summary of results
[ ]jp_vdSkPZh.tar.gz2015-04-17 15:08 226KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.