JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:19 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1dk8a_.name2015-04-17 18:23 0 Job name flag file
[ ]jp_nyNofhE.align2015-04-17 20:18 109KPSIBLAST alignment in FASTA format
[TXT]jp_nyNofhE.als2015-04-17 20:18 2.3KAlscript command file for PS/PDF output
[ ]jp_nyNofhE.blast.gz2015-04-17 20:18 3.4MCompressed PSIBLAST output file
[TXT]jp_nyNofhE.coils.csv2015-04-17 20:18 912 COILS output in CSV format
[ ]jp_nyNofhE.coilseq.lupas_142015-04-17 20:18 6.2KCOILS output, window length 14
[ ]jp_nyNofhE.coilseq.lupas_212015-04-17 20:18 6.2KCOILS output, window length 21
[ ]jp_nyNofhE.coilseq.lupas_282015-04-17 20:18 6.2KCOILS output, window length 28
[ ]jp_nyNofhE.concise2015-04-17 20:18 214KPrediction: coiled-coil, solvent, alignment
[ ]jp_nyNofhE.concise.blc2015-04-17 20:18 109KBLC format prediction and alignment data
[ ]jp_nyNofhE.concise.fasta2015-04-17 20:18 110KPrediction: coiled-coil, solvent, alignment
[ ]jp_nyNofhE.concise.pdf2015-04-17 20:19 711KPDF prediction and alignment data
[ ]jp_nyNofhE.concise.ps2015-04-17 20:18 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_nyNofhE.fasta2015-04-17 20:14 162 Input query sequence in FASTA format
[ ]jp_nyNofhE.full_MSA.fasta2015-04-17 20:18 7.1MFull MSA before JPred filters in FASTA
[TXT]jp_nyNofhE.full_MSA.fasta.noGaps.html2015-04-17 20:19 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_nyNofhE.full_MSA.fasta.withGaps.html2015-04-17 20:19 20MFull MSA before JPred filters in FASTA
[ ]jp_nyNofhE.hmm2015-04-17 20:18 28KHHMer2 profile of the alignment
[TXT]jp_nyNofhE.html2015-04-17 20:18 251KHTML prediction and alignment data
[ ]jp_nyNofhE.input2015-04-17 18:23 154 Raw input data for analysis
[ ]jp_nyNofhE.jalview2015-04-17 20:18 3.8KJalview annotation file for alignment
[ ]jp_nyNofhE.jnet2015-04-17 20:18 5.4KJnet secondary structure output
[TXT]jp_nyNofhE.profile2015-04-17 20:17 24KPSIBLAST profile from alignment
[ ]jp_nyNofhE.pssm2015-04-17 20:18 32KPSIBLAST PSSM for Jnet
[TXT]jp_nyNofhE.results.html2016-02-15 12:16 68KJPred results page
[TXT]jp_nyNofhE.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_nyNofhE.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_nyNofhE.seq2015-04-17 18:23 162 Sequence data file
[TXT]jp_nyNofhE.simple.html2015-04-17 20:18 1.3KBrief HTML: sequence and prediction only
[TXT]jp_nyNofhE.svg.html2015-04-17 20:19 60KJalview SVG summary of results
[ ]jp_nyNofhE.tar.gz2015-04-17 20:19 6.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.