JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:17 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1ecwa_.name2015-04-17 17:47 0 Job name flag file
[ ]jp__cmrkU9.align2015-04-17 19:17 45KPSIBLAST alignment in FASTA format
[TXT]jp__cmrkU9.als2015-04-17 19:17 2.2KAlscript command file for PS/PDF output
[ ]jp__cmrkU9.blast.gz2015-04-17 19:16 674KCompressed PSIBLAST output file
[TXT]jp__cmrkU9.coils.csv2015-04-17 19:17 714 COILS output in CSV format
[ ]jp__cmrkU9.coilseq.lupas_142015-04-17 19:17 4.8KCOILS output, window length 14
[ ]jp__cmrkU9.coilseq.lupas_212015-04-17 19:17 4.8KCOILS output, window length 21
[ ]jp__cmrkU9.coilseq.lupas_282015-04-17 19:17 4.8KCOILS output, window length 28
[ ]jp__cmrkU9.concise2015-04-17 19:17 90KPrediction: coiled-coil, solvent, alignment
[ ]jp__cmrkU9.concise.blc2015-04-17 19:17 46KBLC format prediction and alignment data
[ ]jp__cmrkU9.concise.fasta2015-04-17 19:17 46KPrediction: coiled-coil, solvent, alignment
[ ]jp__cmrkU9.concise.pdf2015-04-17 19:17 252KPDF prediction and alignment data
[ ]jp__cmrkU9.concise.ps2015-04-17 19:17 5.1MPrediction: coiled-coil, solvent, alignment
[ ]jp__cmrkU9.fasta2015-04-17 19:13 128 Input query sequence in FASTA format
[ ]jp__cmrkU9.full_MSA.fasta2015-04-17 19:17 2.0MFull MSA before JPred filters in FASTA
[TXT]jp__cmrkU9.full_MSA.fasta.noGaps.html2015-04-17 19:17 824KFull MSA before JPred filters in FASTA
[TXT]jp__cmrkU9.full_MSA.fasta.withGaps.html2015-04-17 19:17 5.7MFull MSA before JPred filters in FASTA
[ ]jp__cmrkU9.hmm2015-04-17 19:17 21KHHMer2 profile of the alignment
[TXT]jp__cmrkU9.html2015-04-17 19:17 120KHTML prediction and alignment data
[ ]jp__cmrkU9.input2015-04-17 17:47 121 Raw input data for analysis
[ ]jp__cmrkU9.jalview2015-04-17 19:17 3.1KJalview annotation file for alignment
[ ]jp__cmrkU9.jnet2015-04-17 19:17 4.2KJnet secondary structure output
[TXT]jp__cmrkU9.profile2015-04-17 19:15 19KPSIBLAST profile from alignment
[ ]jp__cmrkU9.pssm2015-04-17 19:17 24KPSIBLAST PSSM for Jnet
[TXT]jp__cmrkU9.results.html2016-02-15 12:16 56KJPred results page
[TXT]jp__cmrkU9.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp__cmrkU9.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp__cmrkU9.seq2015-04-17 17:47 128 Sequence data file
[TXT]jp__cmrkU9.simple.html2015-04-17 19:17 1.3KBrief HTML: sequence and prediction only
[TXT]jp__cmrkU9.svg.html2015-04-17 19:17 48KJalview SVG summary of results
[ ]jp__cmrkU9.tar.gz2015-04-17 19:17 1.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.