JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:14 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1em8b_.name2015-04-17 15:11 0 Job name flag file
[ ]jp_hfH_5mn.align2015-04-17 15:14 18KPSIBLAST alignment in FASTA format
[TXT]jp_hfH_5mn.als2015-04-17 15:14 2.5KAlscript command file for PS/PDF output
[ ]jp_hfH_5mn.blast.gz2015-04-17 15:14 49KCompressed PSIBLAST output file
[TXT]jp_hfH_5mn.coils.csv2015-04-17 15:14 690 COILS output in CSV format
[ ]jp_hfH_5mn.coilseq.lupas_142015-04-17 15:14 4.6KCOILS output, window length 14
[ ]jp_hfH_5mn.coilseq.lupas_212015-04-17 15:14 4.6KCOILS output, window length 21
[ ]jp_hfH_5mn.coilseq.lupas_282015-04-17 15:14 4.6KCOILS output, window length 28
[ ]jp_hfH_5mn.concise2015-04-17 15:14 38KPrediction: coiled-coil, solvent, alignment
[ ]jp_hfH_5mn.concise.blc2015-04-17 15:14 19KBLC format prediction and alignment data
[ ]jp_hfH_5mn.concise.fasta2015-04-17 15:14 19KPrediction: coiled-coil, solvent, alignment
[ ]jp_hfH_5mn.concise.pdf2015-04-17 15:14 130KPDF prediction and alignment data
[ ]jp_hfH_5mn.concise.ps2015-04-17 15:14 2.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_hfH_5mn.fasta2015-04-17 15:11 124 Input query sequence in FASTA format
[ ]jp_hfH_5mn.full_MSA.fasta2015-04-17 15:14 45KFull MSA before JPred filters in FASTA
[TXT]jp_hfH_5mn.full_MSA.fasta.noGaps.html2015-04-17 15:14 47KFull MSA before JPred filters in FASTA
[TXT]jp_hfH_5mn.full_MSA.fasta.withGaps.html2015-04-17 15:14 217KFull MSA before JPred filters in FASTA
[ ]jp_hfH_5mn.hmm2015-04-17 15:14 21KHHMer2 profile of the alignment
[TXT]jp_hfH_5mn.html2015-04-17 15:14 55KHTML prediction and alignment data
[ ]jp_hfH_5mn.input2015-04-17 15:11 117 Raw input data for analysis
[ ]jp_hfH_5mn.jalview2015-04-17 15:14 3.0KJalview annotation file for alignment
[ ]jp_hfH_5mn.jnet2015-04-17 15:14 4.1KJnet secondary structure output
[TXT]jp_hfH_5mn.profile2015-04-17 15:13 18KPSIBLAST profile from alignment
[ ]jp_hfH_5mn.pssm2015-04-17 15:14 24KPSIBLAST PSSM for Jnet
[TXT]jp_hfH_5mn.results.html2016-02-15 12:16 55KJPred results page
[TXT]jp_hfH_5mn.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_hfH_5mn.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_hfH_5mn.seq2015-04-17 15:11 124 Sequence data file
[TXT]jp_hfH_5mn.simple.html2015-04-17 15:14 1.3KBrief HTML: sequence and prediction only
[TXT]jp_hfH_5mn.svg.html2015-04-17 15:14 47KJalview SVG summary of results
[ ]jp_hfH_5mn.tar.gz2015-04-17 15:14 272KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.