JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:02 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1eu1a1.name2015-04-17 15:19 0 Job name flag file
[ ]jp_r0NKyMh.align2015-04-17 16:01 145KPSIBLAST alignment in FASTA format
[TXT]jp_r0NKyMh.als2015-04-17 16:01 2.4KAlscript command file for PS/PDF output
[ ]jp_r0NKyMh.blast.gz2015-04-17 16:00 6.5MCompressed PSIBLAST output file
[TXT]jp_r0NKyMh.coils.csv2015-04-17 16:01 960 COILS output in CSV format
[ ]jp_r0NKyMh.coilseq.lupas_142015-04-17 16:01 6.5KCOILS output, window length 14
[ ]jp_r0NKyMh.coilseq.lupas_212015-04-17 16:01 6.5KCOILS output, window length 21
[ ]jp_r0NKyMh.coilseq.lupas_282015-04-17 16:01 6.5KCOILS output, window length 28
[ ]jp_r0NKyMh.concise2015-04-17 16:01 284KPrediction: coiled-coil, solvent, alignment
[ ]jp_r0NKyMh.concise.blc2015-04-17 16:01 145KBLC format prediction and alignment data
[ ]jp_r0NKyMh.concise.fasta2015-04-17 16:01 147KPrediction: coiled-coil, solvent, alignment
[ ]jp_r0NKyMh.concise.pdf2015-04-17 16:02 967KPDF prediction and alignment data
[ ]jp_r0NKyMh.concise.ps2015-04-17 16:01 17MPrediction: coiled-coil, solvent, alignment
[ ]jp_r0NKyMh.fasta2015-04-17 15:19 170 Input query sequence in FASTA format
[ ]jp_r0NKyMh.full_MSA.fasta2015-04-17 16:01 16MFull MSA before JPred filters in FASTA
[TXT]jp_r0NKyMh.full_MSA.fasta.noGaps.html2015-04-17 16:02 2.3MFull MSA before JPred filters in FASTA
[TXT]jp_r0NKyMh.full_MSA.fasta.withGaps.html2015-04-17 16:02 46MFull MSA before JPred filters in FASTA
[ ]jp_r0NKyMh.hmm2015-04-17 16:01 29KHHMer2 profile of the alignment
[TXT]jp_r0NKyMh.html2015-04-17 16:01 319KHTML prediction and alignment data
[ ]jp_r0NKyMh.input2015-04-17 15:19 162 Raw input data for analysis
[ ]jp_r0NKyMh.jalview2015-04-17 16:01 3.8KJalview annotation file for alignment
[ ]jp_r0NKyMh.jnet2015-04-17 16:01 5.7KJnet secondary structure output
[TXT]jp_r0NKyMh.profile2015-04-17 15:54 25KPSIBLAST profile from alignment
[ ]jp_r0NKyMh.pssm2015-04-17 16:01 33KPSIBLAST PSSM for Jnet
[TXT]jp_r0NKyMh.results.html2016-02-15 12:16 69KJPred results page
[TXT]jp_r0NKyMh.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_r0NKyMh.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_r0NKyMh.seq2015-04-17 15:19 170 Sequence data file
[TXT]jp_r0NKyMh.simple.html2015-04-17 16:01 1.4KBrief HTML: sequence and prediction only
[TXT]jp_r0NKyMh.svg.html2015-04-17 16:02 61KJalview SVG summary of results
[ ]jp_r0NKyMh.tar.gz2015-04-17 16:02 12MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.