JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:19 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1ewfa1.name2015-04-17 17:10 0 Job name flag file
[ ]jp_xsszU1M.align2015-04-17 18:19 133KPSIBLAST alignment in FASTA format
[TXT]jp_xsszU1M.als2015-04-17 18:19 3.3KAlscript command file for PS/PDF output
[ ]jp_xsszU1M.blast.gz2015-04-17 18:18 771KCompressed PSIBLAST output file
[TXT]jp_xsszU1M.coils.csv2015-04-17 18:19 1.3KCOILS output in CSV format
[ ]jp_xsszU1M.coilseq.lupas_142015-04-17 18:19 9.1KCOILS output, window length 14
[ ]jp_xsszU1M.coilseq.lupas_212015-04-17 18:19 9.1KCOILS output, window length 21
[ ]jp_xsszU1M.coilseq.lupas_282015-04-17 18:19 9.1KCOILS output, window length 28
[ ]jp_xsszU1M.concise2015-04-17 18:19 264KPrediction: coiled-coil, solvent, alignment
[ ]jp_xsszU1M.concise.blc2015-04-17 18:19 134KBLC format prediction and alignment data
[ ]jp_xsszU1M.concise.fasta2015-04-17 18:19 135KPrediction: coiled-coil, solvent, alignment
[ ]jp_xsszU1M.concise.pdf2015-04-17 18:19 1.0MPDF prediction and alignment data
[ ]jp_xsszU1M.concise.ps2015-04-17 18:19 17MPrediction: coiled-coil, solvent, alignment
[ ]jp_xsszU1M.fasta2015-04-17 18:13 233 Input query sequence in FASTA format
[ ]jp_xsszU1M.full_MSA.fasta2015-04-17 18:19 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_xsszU1M.full_MSA.fasta.noGaps.html2015-04-17 18:19 369KFull MSA before JPred filters in FASTA
[TXT]jp_xsszU1M.full_MSA.fasta.withGaps.html2015-04-17 18:19 5.4MFull MSA before JPred filters in FASTA
[ ]jp_xsszU1M.hmm2015-04-17 18:19 41KHHMer2 profile of the alignment
[TXT]jp_xsszU1M.html2015-04-17 18:19 263KHTML prediction and alignment data
[ ]jp_xsszU1M.input2015-04-17 17:10 224 Raw input data for analysis
[ ]jp_xsszU1M.jalview2015-04-17 18:19 5.3KJalview annotation file for alignment
[ ]jp_xsszU1M.jnet2015-04-17 18:19 8.0KJnet secondary structure output
[TXT]jp_xsszU1M.profile2015-04-17 18:16 35KPSIBLAST profile from alignment
[ ]jp_xsszU1M.pssm2015-04-17 18:19 47KPSIBLAST PSSM for Jnet
[TXT]jp_xsszU1M.results.html2016-02-15 12:16 95KJPred results page
[TXT]jp_xsszU1M.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_xsszU1M.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_xsszU1M.seq2015-04-17 17:10 233 Sequence data file
[TXT]jp_xsszU1M.simple.html2015-04-17 18:19 1.6KBrief HTML: sequence and prediction only
[TXT]jp_xsszU1M.svg.html2015-04-17 18:19 86KJalview SVG summary of results
[ ]jp_xsszU1M.tar.gz2015-04-17 18:19 2.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.