JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:16 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1f1ma_.name2015-04-17 17:11 0 Job name flag file
[ ]jp_EXaMNai.align2015-04-17 18:16 37KPSIBLAST alignment in FASTA format
[TXT]jp_EXaMNai.als2015-04-17 18:16 2.2KAlscript command file for PS/PDF output
[ ]jp_EXaMNai.blast.gz2015-04-17 18:16 101KCompressed PSIBLAST output file
[TXT]jp_EXaMNai.coils.csv2015-04-17 18:16 1.0KCOILS output in CSV format
[ ]jp_EXaMNai.coilseq.lupas_142015-04-17 18:16 6.8KCOILS output, window length 14
[ ]jp_EXaMNai.coilseq.lupas_212015-04-17 18:16 6.8KCOILS output, window length 21
[ ]jp_EXaMNai.coilseq.lupas_282015-04-17 18:16 6.8KCOILS output, window length 28
[ ]jp_EXaMNai.concise2015-04-17 18:16 77KPrediction: coiled-coil, solvent, alignment
[ ]jp_EXaMNai.concise.blc2015-04-17 18:16 39KBLC format prediction and alignment data
[ ]jp_EXaMNai.concise.fasta2015-04-17 18:16 38KPrediction: coiled-coil, solvent, alignment
[ ]jp_EXaMNai.concise.pdf2015-04-17 18:16 239KPDF prediction and alignment data
[ ]jp_EXaMNai.concise.ps2015-04-17 18:16 4.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_EXaMNai.fasta2015-04-17 18:14 177 Input query sequence in FASTA format
[ ]jp_EXaMNai.full_MSA.fasta2015-04-17 18:16 109KFull MSA before JPred filters in FASTA
[TXT]jp_EXaMNai.full_MSA.fasta.noGaps.html2015-04-17 18:16 103KFull MSA before JPred filters in FASTA
[TXT]jp_EXaMNai.full_MSA.fasta.withGaps.html2015-04-17 18:16 546KFull MSA before JPred filters in FASTA
[ ]jp_EXaMNai.hmm2015-04-17 18:16 30KHHMer2 profile of the alignment
[TXT]jp_EXaMNai.html2015-04-17 18:16 95KHTML prediction and alignment data
[ ]jp_EXaMNai.input2015-04-17 17:11 169 Raw input data for analysis
[ ]jp_EXaMNai.jalview2015-04-17 18:16 4.1KJalview annotation file for alignment
[ ]jp_EXaMNai.jnet2015-04-17 18:16 6.0KJnet secondary structure output
[TXT]jp_EXaMNai.profile2015-04-17 18:15 26KPSIBLAST profile from alignment
[ ]jp_EXaMNai.pssm2015-04-17 18:16 35KPSIBLAST PSSM for Jnet
[TXT]jp_EXaMNai.results.html2016-02-15 12:16 73KJPred results page
[TXT]jp_EXaMNai.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_EXaMNai.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_EXaMNai.seq2015-04-17 17:11 177 Sequence data file
[TXT]jp_EXaMNai.simple.html2015-04-17 18:16 1.3KBrief HTML: sequence and prediction only
[TXT]jp_EXaMNai.svg.html2015-04-17 18:16 65KJalview SVG summary of results
[ ]jp_EXaMNai.tar.gz2015-04-17 18:16 443KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.