JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:23 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1f44a1.name2015-04-17 15:18 0 Job name flag file
[ ]jp_RfmsPRk.align2015-04-17 15:23 124KPSIBLAST alignment in FASTA format
[TXT]jp_RfmsPRk.als2015-04-17 15:23 2.0KAlscript command file for PS/PDF output
[ ]jp_RfmsPRk.blast.gz2015-04-17 15:22 2.9MCompressed PSIBLAST output file
[TXT]jp_RfmsPRk.coils.csv2015-04-17 15:23 690 COILS output in CSV format
[ ]jp_RfmsPRk.coilseq.lupas_142015-04-17 15:23 4.6KCOILS output, window length 14
[ ]jp_RfmsPRk.coilseq.lupas_212015-04-17 15:23 4.6KCOILS output, window length 21
[ ]jp_RfmsPRk.coilseq.lupas_282015-04-17 15:23 4.6KCOILS output, window length 28
[ ]jp_RfmsPRk.concise2015-04-17 15:23 239KPrediction: coiled-coil, solvent, alignment
[ ]jp_RfmsPRk.concise.blc2015-04-17 15:23 123KBLC format prediction and alignment data
[ ]jp_RfmsPRk.concise.fasta2015-04-17 15:23 125KPrediction: coiled-coil, solvent, alignment
[ ]jp_RfmsPRk.concise.pdf2015-04-17 15:23 751KPDF prediction and alignment data
[ ]jp_RfmsPRk.concise.ps2015-04-17 15:23 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_RfmsPRk.fasta2015-04-17 15:18 124 Input query sequence in FASTA format
[ ]jp_RfmsPRk.full_MSA.fasta2015-04-17 15:22 12MFull MSA before JPred filters in FASTA
[TXT]jp_RfmsPRk.full_MSA.fasta.noGaps.html2015-04-17 15:23 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_RfmsPRk.full_MSA.fasta.withGaps.html2015-04-17 15:23 32MFull MSA before JPred filters in FASTA
[ ]jp_RfmsPRk.hmm2015-04-17 15:23 21KHHMer2 profile of the alignment
[TXT]jp_RfmsPRk.html2015-04-17 15:23 323KHTML prediction and alignment data
[ ]jp_RfmsPRk.input2015-04-17 15:18 117 Raw input data for analysis
[ ]jp_RfmsPRk.jalview2015-04-17 15:23 3.1KJalview annotation file for alignment
[ ]jp_RfmsPRk.jnet2015-04-17 15:23 4.1KJnet secondary structure output
[TXT]jp_RfmsPRk.profile2015-04-17 15:20 18KPSIBLAST profile from alignment
[ ]jp_RfmsPRk.pssm2015-04-17 15:23 24KPSIBLAST PSSM for Jnet
[TXT]jp_RfmsPRk.results.html2016-02-15 12:16 53KJPred results page
[TXT]jp_RfmsPRk.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_RfmsPRk.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_RfmsPRk.seq2015-04-17 15:18 124 Sequence data file
[TXT]jp_RfmsPRk.simple.html2015-04-17 15:23 1.2KBrief HTML: sequence and prediction only
[TXT]jp_RfmsPRk.svg.html2015-04-17 15:23 45KJalview SVG summary of results
[ ]jp_RfmsPRk.tar.gz2015-04-17 15:23 7.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.