JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:45 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1f46a_.name2015-04-17 15:20 0 Job name flag file
[ ]jp_mZkknJr.align2015-04-17 15:45 59KPSIBLAST alignment in FASTA format
[TXT]jp_mZkknJr.als2015-04-17 15:45 2.4KAlscript command file for PS/PDF output
[ ]jp_mZkknJr.blast.gz2015-04-17 15:45 265KCompressed PSIBLAST output file
[TXT]jp_mZkknJr.coils.csv2015-04-17 15:45 864 COILS output in CSV format
[ ]jp_mZkknJr.coilseq.lupas_142015-04-17 15:45 5.8KCOILS output, window length 14
[ ]jp_mZkknJr.coilseq.lupas_212015-04-17 15:45 5.8KCOILS output, window length 21
[ ]jp_mZkknJr.coilseq.lupas_282015-04-17 15:45 5.8KCOILS output, window length 28
[ ]jp_mZkknJr.concise2015-04-17 15:45 118KPrediction: coiled-coil, solvent, alignment
[ ]jp_mZkknJr.concise.blc2015-04-17 15:45 60KBLC format prediction and alignment data
[ ]jp_mZkknJr.concise.fasta2015-04-17 15:45 60KPrediction: coiled-coil, solvent, alignment
[ ]jp_mZkknJr.concise.pdf2015-04-17 15:45 407KPDF prediction and alignment data
[ ]jp_mZkknJr.concise.ps2015-04-17 15:45 7.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_mZkknJr.fasta2015-04-17 15:20 153 Input query sequence in FASTA format
[ ]jp_mZkknJr.full_MSA.fasta2015-04-17 15:45 312KFull MSA before JPred filters in FASTA
[TXT]jp_mZkknJr.full_MSA.fasta.noGaps.html2015-04-17 15:45 225KFull MSA before JPred filters in FASTA
[TXT]jp_mZkknJr.full_MSA.fasta.withGaps.html2015-04-17 15:45 1.9MFull MSA before JPred filters in FASTA
[ ]jp_mZkknJr.hmm2015-04-17 15:45 26KHHMer2 profile of the alignment
[TXT]jp_mZkknJr.html2015-04-17 15:45 145KHTML prediction and alignment data
[ ]jp_mZkknJr.input2015-04-17 15:20 146 Raw input data for analysis
[ ]jp_mZkknJr.jalview2015-04-17 15:45 3.6KJalview annotation file for alignment
[ ]jp_mZkknJr.jnet2015-04-17 15:45 5.1KJnet secondary structure output
[TXT]jp_mZkknJr.profile2015-04-17 15:34 23KPSIBLAST profile from alignment
[ ]jp_mZkknJr.pssm2015-04-17 15:45 30KPSIBLAST PSSM for Jnet
[TXT]jp_mZkknJr.results.html2016-02-15 12:16 64KJPred results page
[TXT]jp_mZkknJr.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_mZkknJr.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_mZkknJr.seq2015-04-17 15:20 153 Sequence data file
[TXT]jp_mZkknJr.simple.html2015-04-17 15:45 1.3KBrief HTML: sequence and prediction only
[TXT]jp_mZkknJr.svg.html2015-04-17 15:45 56KJalview SVG summary of results
[ ]jp_mZkknJr.tar.gz2015-04-17 15:45 971KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.