JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:18 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1f7ua3.name2015-04-17 19:00 0 Job name flag file
[ ]jp__pCfA1K.align2015-04-17 21:17 171KPSIBLAST alignment in FASTA format
[TXT]jp__pCfA1K.als2015-04-17 21:17 2.4KAlscript command file for PS/PDF output
[ ]jp__pCfA1K.blast.gz2015-04-17 21:16 1.2MCompressed PSIBLAST output file
[TXT]jp__pCfA1K.coils.csv2015-04-17 21:17 834 COILS output in CSV format
[ ]jp__pCfA1K.coilseq.lupas_142015-04-17 21:17 5.6KCOILS output, window length 14
[ ]jp__pCfA1K.coilseq.lupas_212015-04-17 21:17 5.6KCOILS output, window length 21
[ ]jp__pCfA1K.coilseq.lupas_282015-04-17 21:17 5.6KCOILS output, window length 28
[ ]jp__pCfA1K.concise2015-04-17 21:17 333KPrediction: coiled-coil, solvent, alignment
[ ]jp__pCfA1K.concise.blc2015-04-17 21:17 171KBLC format prediction and alignment data
[ ]jp__pCfA1K.concise.fasta2015-04-17 21:17 172KPrediction: coiled-coil, solvent, alignment
[ ]jp__pCfA1K.concise.pdf2015-04-17 21:17 1.0MPDF prediction and alignment data
[ ]jp__pCfA1K.concise.ps2015-04-17 21:17 19MPrediction: coiled-coil, solvent, alignment
[ ]jp__pCfA1K.fasta2015-04-17 21:12 148 Input query sequence in FASTA format
[ ]jp__pCfA1K.full_MSA.fasta2015-04-17 21:17 3.6MFull MSA before JPred filters in FASTA
[TXT]jp__pCfA1K.full_MSA.fasta.noGaps.html2015-04-17 21:18 1.0MFull MSA before JPred filters in FASTA
[TXT]jp__pCfA1K.full_MSA.fasta.withGaps.html2015-04-17 21:18 15MFull MSA before JPred filters in FASTA
[ ]jp__pCfA1K.hmm2015-04-17 21:17 25KHHMer2 profile of the alignment
[TXT]jp__pCfA1K.html2015-04-17 21:17 402KHTML prediction and alignment data
[ ]jp__pCfA1K.input2015-04-17 19:00 141 Raw input data for analysis
[ ]jp__pCfA1K.jalview2015-04-17 21:17 3.5KJalview annotation file for alignment
[ ]jp__pCfA1K.jnet2015-04-17 21:17 5.0KJnet secondary structure output
[TXT]jp__pCfA1K.profile2015-04-17 21:14 22KPSIBLAST profile from alignment
[ ]jp__pCfA1K.pssm2015-04-17 21:17 29KPSIBLAST PSSM for Jnet
[TXT]jp__pCfA1K.results.html2016-02-15 12:16 63KJPred results page
[TXT]jp__pCfA1K.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp__pCfA1K.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp__pCfA1K.seq2015-04-17 19:00 148 Sequence data file
[TXT]jp__pCfA1K.simple.html2015-04-17 21:17 1.3KBrief HTML: sequence and prediction only
[TXT]jp__pCfA1K.svg.html2015-04-17 21:18 55KJalview SVG summary of results
[ ]jp__pCfA1K.tar.gz2015-04-17 21:18 3.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.