JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:24 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1fkma1.name2015-04-17 17:11 0 Job name flag file
[ ]jp_nUCICef.align2015-04-17 18:23 137KPSIBLAST alignment in FASTA format
[TXT]jp_nUCICef.als2015-04-17 18:23 2.8KAlscript command file for PS/PDF output
[ ]jp_nUCICef.blast.gz2015-04-17 18:21 12MCompressed PSIBLAST output file
[TXT]jp_nUCICef.coils.csv2015-04-17 18:23 1.2KCOILS output in CSV format
[ ]jp_nUCICef.coilseq.lupas_142015-04-17 18:23 8.1KCOILS output, window length 14
[ ]jp_nUCICef.coilseq.lupas_212015-04-17 18:23 8.1KCOILS output, window length 21
[ ]jp_nUCICef.coilseq.lupas_282015-04-17 18:23 8.1KCOILS output, window length 28
[ ]jp_nUCICef.concise2015-04-17 18:23 272KPrediction: coiled-coil, solvent, alignment
[ ]jp_nUCICef.concise.blc2015-04-17 18:23 138KBLC format prediction and alignment data
[ ]jp_nUCICef.concise.fasta2015-04-17 18:23 139KPrediction: coiled-coil, solvent, alignment
[ ]jp_nUCICef.concise.pdf2015-04-17 18:24 918KPDF prediction and alignment data
[ ]jp_nUCICef.concise.ps2015-04-17 18:23 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_nUCICef.fasta2015-04-17 18:15 209 Input query sequence in FASTA format
[ ]jp_nUCICef.full_MSA.fasta2015-04-17 18:22 27MFull MSA before JPred filters in FASTA
[TXT]jp_nUCICef.full_MSA.fasta.noGaps.html2015-04-17 18:24 2.1MFull MSA before JPred filters in FASTA
[TXT]jp_nUCICef.full_MSA.fasta.withGaps.html2015-04-17 18:24 57MFull MSA before JPred filters in FASTA
[ ]jp_nUCICef.hmm2015-04-17 18:23 36KHHMer2 profile of the alignment
[TXT]jp_nUCICef.html2015-04-17 18:23 281KHTML prediction and alignment data
[ ]jp_nUCICef.input2015-04-17 17:11 201 Raw input data for analysis
[ ]jp_nUCICef.jalview2015-04-17 18:23 4.7KJalview annotation file for alignment
[ ]jp_nUCICef.jnet2015-04-17 18:23 7.1KJnet secondary structure output
[TXT]jp_nUCICef.profile2015-04-17 18:20 31KPSIBLAST profile from alignment
[ ]jp_nUCICef.pssm2015-04-17 18:23 42KPSIBLAST PSSM for Jnet
[TXT]jp_nUCICef.results.html2016-02-15 12:16 88KJPred results page
[TXT]jp_nUCICef.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_nUCICef.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_nUCICef.seq2015-04-17 17:11 209 Sequence data file
[TXT]jp_nUCICef.simple.html2015-04-17 18:23 1.5KBrief HTML: sequence and prediction only
[TXT]jp_nUCICef.svg.html2015-04-17 18:24 80KJalview SVG summary of results
[ ]jp_nUCICef.tar.gz2015-04-17 18:24 18MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.