JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:19 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1fpoa2.name2015-04-17 17:11 0 Job name flag file
[ ]jp_FzuCgw4.align2015-04-17 18:19 66KPSIBLAST alignment in FASTA format
[TXT]jp_FzuCgw4.als2015-04-17 18:19 1.6KAlscript command file for PS/PDF output
[ ]jp_FzuCgw4.blast.gz2015-04-17 18:19 176KCompressed PSIBLAST output file
[TXT]jp_FzuCgw4.coils.csv2015-04-17 18:19 600 COILS output in CSV format
[ ]jp_FzuCgw4.coilseq.lupas_142015-04-17 18:19 4.0KCOILS output, window length 14
[ ]jp_FzuCgw4.coilseq.lupas_212015-04-17 18:19 4.0KCOILS output, window length 21
[ ]jp_FzuCgw4.coilseq.lupas_282015-04-17 18:19 4.0KCOILS output, window length 28
[ ]jp_FzuCgw4.concise2015-04-17 18:19 128KPrediction: coiled-coil, solvent, alignment
[ ]jp_FzuCgw4.concise.blc2015-04-17 18:19 66KBLC format prediction and alignment data
[ ]jp_FzuCgw4.concise.fasta2015-04-17 18:19 67KPrediction: coiled-coil, solvent, alignment
[ ]jp_FzuCgw4.concise.pdf2015-04-17 18:19 410KPDF prediction and alignment data
[ ]jp_FzuCgw4.concise.ps2015-04-17 18:19 7.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_FzuCgw4.fasta2015-04-17 18:15 109 Input query sequence in FASTA format
[ ]jp_FzuCgw4.full_MSA.fasta2015-04-17 18:19 274KFull MSA before JPred filters in FASTA
[TXT]jp_FzuCgw4.full_MSA.fasta.noGaps.html2015-04-17 18:19 181KFull MSA before JPred filters in FASTA
[TXT]jp_FzuCgw4.full_MSA.fasta.withGaps.html2015-04-17 18:19 1.2MFull MSA before JPred filters in FASTA
[ ]jp_FzuCgw4.hmm2015-04-17 18:19 18KHHMer2 profile of the alignment
[TXT]jp_FzuCgw4.html2015-04-17 18:19 191KHTML prediction and alignment data
[ ]jp_FzuCgw4.input2015-04-17 17:11 102 Raw input data for analysis
[ ]jp_FzuCgw4.jalview2015-04-17 18:19 2.8KJalview annotation file for alignment
[ ]jp_FzuCgw4.jnet2015-04-17 18:19 3.5KJnet secondary structure output
[TXT]jp_FzuCgw4.profile2015-04-17 18:18 16KPSIBLAST profile from alignment
[ ]jp_FzuCgw4.pssm2015-04-17 18:19 20KPSIBLAST PSSM for Jnet
[TXT]jp_FzuCgw4.results.html2016-02-15 12:16 46KJPred results page
[TXT]jp_FzuCgw4.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_FzuCgw4.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_FzuCgw4.seq2015-04-17 17:11 109 Sequence data file
[TXT]jp_FzuCgw4.simple.html2015-04-17 18:19 1.1KBrief HTML: sequence and prediction only
[TXT]jp_FzuCgw4.svg.html2015-04-17 18:19 38KJalview SVG summary of results
[ ]jp_FzuCgw4.tar.gz2015-04-17 18:19 849KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.