JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:24 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1fsga_.name2015-04-17 17:12 0 Job name flag file
[ ]jp_nGS2Yif.align2015-04-17 18:23 230KPSIBLAST alignment in FASTA format
[TXT]jp_nGS2Yif.als2015-04-17 18:23 3.5KAlscript command file for PS/PDF output
[ ]jp_nGS2Yif.blast.gz2015-04-17 18:22 2.9MCompressed PSIBLAST output file
[TXT]jp_nGS2Yif.coils.csv2015-04-17 18:23 1.4KCOILS output in CSV format
[ ]jp_nGS2Yif.coilseq.lupas_142015-04-17 18:23 9.8KCOILS output, window length 14
[ ]jp_nGS2Yif.coilseq.lupas_212015-04-17 18:23 9.8KCOILS output, window length 21
[ ]jp_nGS2Yif.coilseq.lupas_282015-04-17 18:23 9.8KCOILS output, window length 28
[ ]jp_nGS2Yif.concise2015-04-17 18:23 453KPrediction: coiled-coil, solvent, alignment
[ ]jp_nGS2Yif.concise.blc2015-04-17 18:23 230KBLC format prediction and alignment data
[ ]jp_nGS2Yif.concise.fasta2015-04-17 18:23 232KPrediction: coiled-coil, solvent, alignment
[ ]jp_nGS2Yif.concise.pdf2015-04-17 18:23 1.4MPDF prediction and alignment data
[ ]jp_nGS2Yif.concise.ps2015-04-17 18:23 27MPrediction: coiled-coil, solvent, alignment
[ ]jp_nGS2Yif.fasta2015-04-17 18:15 249 Input query sequence in FASTA format
[ ]jp_nGS2Yif.full_MSA.fasta2015-04-17 18:22 6.1MFull MSA before JPred filters in FASTA
[TXT]jp_nGS2Yif.full_MSA.fasta.noGaps.html2015-04-17 18:23 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_nGS2Yif.full_MSA.fasta.withGaps.html2015-04-17 18:23 29MFull MSA before JPred filters in FASTA
[ ]jp_nGS2Yif.hmm2015-04-17 18:23 44KHHMer2 profile of the alignment
[TXT]jp_nGS2Yif.html2015-04-17 18:23 426KHTML prediction and alignment data
[ ]jp_nGS2Yif.input2015-04-17 17:12 240 Raw input data for analysis
[ ]jp_nGS2Yif.jalview2015-04-17 18:23 5.5KJalview annotation file for alignment
[ ]jp_nGS2Yif.jnet2015-04-17 18:23 8.5KJnet secondary structure output
[TXT]jp_nGS2Yif.profile2015-04-17 18:20 37KPSIBLAST profile from alignment
[ ]jp_nGS2Yif.pssm2015-04-17 18:23 50KPSIBLAST PSSM for Jnet
[TXT]jp_nGS2Yif.results.html2016-02-15 12:16 101KJPred results page
[TXT]jp_nGS2Yif.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_nGS2Yif.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_nGS2Yif.seq2015-04-17 17:12 249 Sequence data file
[TXT]jp_nGS2Yif.simple.html2015-04-17 18:23 1.7KBrief HTML: sequence and prediction only
[TXT]jp_nGS2Yif.svg.html2015-04-17 18:23 93KJalview SVG summary of results
[ ]jp_nGS2Yif.tar.gz2015-04-17 18:24 7.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.