JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:22 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1fxka_.name2015-04-17 17:12 0 Job name flag file
[ ]jp_ZeXL8Sh.align2015-04-17 18:22 16KPSIBLAST alignment in FASTA format
[TXT]jp_ZeXL8Sh.als2015-04-17 18:22 1.7KAlscript command file for PS/PDF output
[ ]jp_ZeXL8Sh.blast.gz2015-04-17 18:22 21KCompressed PSIBLAST output file
[TXT]jp_ZeXL8Sh.coils.csv2015-04-17 18:22 672 COILS output in CSV format
[ ]jp_ZeXL8Sh.coilseq.lupas_142015-04-17 18:22 4.5KCOILS output, window length 14
[ ]jp_ZeXL8Sh.coilseq.lupas_212015-04-17 18:22 4.5KCOILS output, window length 21
[ ]jp_ZeXL8Sh.coilseq.lupas_282015-04-17 18:22 4.5KCOILS output, window length 28
[ ]jp_ZeXL8Sh.concise2015-04-17 18:22 36KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZeXL8Sh.concise.blc2015-04-17 18:22 18KBLC format prediction and alignment data
[ ]jp_ZeXL8Sh.concise.fasta2015-04-17 18:22 18KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZeXL8Sh.concise.pdf2015-04-17 18:22 106KPDF prediction and alignment data
[ ]jp_ZeXL8Sh.concise.ps2015-04-17 18:22 2.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_ZeXL8Sh.fasta2015-04-17 18:16 121 Input query sequence in FASTA format
[ ]jp_ZeXL8Sh.full_MSA.fasta2015-04-17 18:22 27KFull MSA before JPred filters in FASTA
[TXT]jp_ZeXL8Sh.full_MSA.fasta.noGaps.html2015-04-17 18:22 40KFull MSA before JPred filters in FASTA
[TXT]jp_ZeXL8Sh.full_MSA.fasta.withGaps.html2015-04-17 18:22 91KFull MSA before JPred filters in FASTA
[ ]jp_ZeXL8Sh.hmm2015-04-17 18:22 20KHHMer2 profile of the alignment
[TXT]jp_ZeXL8Sh.html2015-04-17 18:22 57KHTML prediction and alignment data
[ ]jp_ZeXL8Sh.input2015-04-17 17:12 114 Raw input data for analysis
[ ]jp_ZeXL8Sh.jalview2015-04-17 18:22 3.1KJalview annotation file for alignment
[ ]jp_ZeXL8Sh.jnet2015-04-17 18:22 4.0KJnet secondary structure output
[TXT]jp_ZeXL8Sh.profile2015-04-17 18:19 17KPSIBLAST profile from alignment
[ ]jp_ZeXL8Sh.pssm2015-04-17 18:22 23KPSIBLAST PSSM for Jnet
[TXT]jp_ZeXL8Sh.results.html2016-02-15 12:17 51KJPred results page
[TXT]jp_ZeXL8Sh.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ZeXL8Sh.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ZeXL8Sh.seq2015-04-17 17:12 121 Sequence data file
[TXT]jp_ZeXL8Sh.simple.html2015-04-17 18:22 1.2KBrief HTML: sequence and prediction only
[TXT]jp_ZeXL8Sh.svg.html2015-04-17 18:22 42KJalview SVG summary of results
[ ]jp_ZeXL8Sh.tar.gz2015-04-17 18:22 188KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.