JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:37 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1gpja1.name2015-04-17 15:30 0 Job name flag file
[ ]jp_lGcSc3K.align2015-04-17 15:37 50KPSIBLAST alignment in FASTA format
[TXT]jp_lGcSc3K.als2015-04-17 15:37 1.6KAlscript command file for PS/PDF output
[ ]jp_lGcSc3K.blast.gz2015-04-17 15:36 63KCompressed PSIBLAST output file
[TXT]jp_lGcSc3K.coils.csv2015-04-17 15:37 612 COILS output in CSV format
[ ]jp_lGcSc3K.coilseq.lupas_142015-04-17 15:37 4.1KCOILS output, window length 14
[ ]jp_lGcSc3K.coilseq.lupas_212015-04-17 15:37 4.1KCOILS output, window length 21
[ ]jp_lGcSc3K.coilseq.lupas_282015-04-17 15:37 4.1KCOILS output, window length 28
[ ]jp_lGcSc3K.concise2015-04-17 15:37 99KPrediction: coiled-coil, solvent, alignment
[ ]jp_lGcSc3K.concise.blc2015-04-17 15:37 51KBLC format prediction and alignment data
[ ]jp_lGcSc3K.concise.fasta2015-04-17 15:37 51KPrediction: coiled-coil, solvent, alignment
[ ]jp_lGcSc3K.concise.pdf2015-04-17 15:37 316KPDF prediction and alignment data
[ ]jp_lGcSc3K.concise.ps2015-04-17 15:37 5.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_lGcSc3K.fasta2015-04-17 15:33 111 Input query sequence in FASTA format
[ ]jp_lGcSc3K.full_MSA.fasta2015-04-17 15:36 117KFull MSA before JPred filters in FASTA
[TXT]jp_lGcSc3K.full_MSA.fasta.noGaps.html2015-04-17 15:37 159KFull MSA before JPred filters in FASTA
[TXT]jp_lGcSc3K.full_MSA.fasta.withGaps.html2015-04-17 15:37 535KFull MSA before JPred filters in FASTA
[ ]jp_lGcSc3K.hmm2015-04-17 15:37 18KHHMer2 profile of the alignment
[TXT]jp_lGcSc3K.html2015-04-17 15:37 149KHTML prediction and alignment data
[ ]jp_lGcSc3K.input2015-04-17 15:30 104 Raw input data for analysis
[ ]jp_lGcSc3K.jalview2015-04-17 15:37 2.9KJalview annotation file for alignment
[ ]jp_lGcSc3K.jnet2015-04-17 15:37 3.6KJnet secondary structure output
[TXT]jp_lGcSc3K.profile2015-04-17 15:35 16KPSIBLAST profile from alignment
[ ]jp_lGcSc3K.pssm2015-04-17 15:37 21KPSIBLAST PSSM for Jnet
[TXT]jp_lGcSc3K.results.html2016-02-15 12:17 47KJPred results page
[TXT]jp_lGcSc3K.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_lGcSc3K.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_lGcSc3K.seq2015-04-17 15:30 111 Sequence data file
[TXT]jp_lGcSc3K.simple.html2015-04-17 15:37 1.1KBrief HTML: sequence and prediction only
[TXT]jp_lGcSc3K.svg.html2015-04-17 15:37 39KJalview SVG summary of results
[ ]jp_lGcSc3K.tar.gz2015-04-17 15:37 559KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.