JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:49 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1gpja3.name2015-04-17 15:57 0 Job name flag file
[ ]jp_aqrqUU_.align2015-04-17 16:48 150KPSIBLAST alignment in FASTA format
[TXT]jp_aqrqUU_.als2015-04-17 16:48 2.8KAlscript command file for PS/PDF output
[ ]jp_aqrqUU_.blast.gz2015-04-17 16:47 1.8MCompressed PSIBLAST output file
[TXT]jp_aqrqUU_.coils.csv2015-04-17 16:48 888 COILS output in CSV format
[ ]jp_aqrqUU_.coilseq.lupas_142015-04-17 16:48 6.0KCOILS output, window length 14
[ ]jp_aqrqUU_.coilseq.lupas_212015-04-17 16:48 6.0KCOILS output, window length 21
[ ]jp_aqrqUU_.coilseq.lupas_282015-04-17 16:48 6.0KCOILS output, window length 28
[ ]jp_aqrqUU_.concise2015-04-17 16:48 294KPrediction: coiled-coil, solvent, alignment
[ ]jp_aqrqUU_.concise.blc2015-04-17 16:48 151KBLC format prediction and alignment data
[ ]jp_aqrqUU_.concise.fasta2015-04-17 16:48 152KPrediction: coiled-coil, solvent, alignment
[ ]jp_aqrqUU_.concise.pdf2015-04-17 16:48 1.0MPDF prediction and alignment data
[ ]jp_aqrqUU_.concise.ps2015-04-17 16:48 18MPrediction: coiled-coil, solvent, alignment
[ ]jp_aqrqUU_.fasta2015-04-17 16:16 157 Input query sequence in FASTA format
[ ]jp_aqrqUU_.full_MSA.fasta2015-04-17 16:47 2.8MFull MSA before JPred filters in FASTA
[TXT]jp_aqrqUU_.full_MSA.fasta.noGaps.html2015-04-17 16:48 679KFull MSA before JPred filters in FASTA
[TXT]jp_aqrqUU_.full_MSA.fasta.withGaps.html2015-04-17 16:48 8.1MFull MSA before JPred filters in FASTA
[ ]jp_aqrqUU_.hmm2015-04-17 16:48 27KHHMer2 profile of the alignment
[TXT]jp_aqrqUU_.html2015-04-17 16:48 348KHTML prediction and alignment data
[ ]jp_aqrqUU_.input2015-04-17 15:57 150 Raw input data for analysis
[ ]jp_aqrqUU_.jalview2015-04-17 16:48 3.7KJalview annotation file for alignment
[ ]jp_aqrqUU_.jnet2015-04-17 16:48 5.3KJnet secondary structure output
[TXT]jp_aqrqUU_.profile2015-04-17 16:38 23KPSIBLAST profile from alignment
[ ]jp_aqrqUU_.pssm2015-04-17 16:48 31KPSIBLAST PSSM for Jnet
[TXT]jp_aqrqUU_.results.html2016-02-15 12:17 68KJPred results page
[TXT]jp_aqrqUU_.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_aqrqUU_.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_aqrqUU_.seq2015-04-17 15:57 157 Sequence data file
[TXT]jp_aqrqUU_.simple.html2015-04-17 16:48 1.4KBrief HTML: sequence and prediction only
[TXT]jp_aqrqUU_.svg.html2015-04-17 16:49 60KJalview SVG summary of results
[ ]jp_aqrqUU_.tar.gz2015-04-17 16:49 4.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.