JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:21 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1gpqa_.name2015-04-17 17:48 0 Job name flag file
[ ]jp_g8Ps1Pm.align2015-04-17 19:21 18KPSIBLAST alignment in FASTA format
[TXT]jp_g8Ps1Pm.als2015-04-17 19:21 2.4KAlscript command file for PS/PDF output
[ ]jp_g8Ps1Pm.blast.gz2015-04-17 19:21 54KCompressed PSIBLAST output file
[TXT]jp_g8Ps1Pm.coils.csv2015-04-17 19:21 792 COILS output in CSV format
[ ]jp_g8Ps1Pm.coilseq.lupas_142015-04-17 19:21 5.3KCOILS output, window length 14
[ ]jp_g8Ps1Pm.coilseq.lupas_212015-04-17 19:21 5.3KCOILS output, window length 21
[ ]jp_g8Ps1Pm.coilseq.lupas_282015-04-17 19:21 5.3KCOILS output, window length 28
[ ]jp_g8Ps1Pm.concise2015-04-17 19:21 40KPrediction: coiled-coil, solvent, alignment
[ ]jp_g8Ps1Pm.concise.blc2015-04-17 19:21 20KBLC format prediction and alignment data
[ ]jp_g8Ps1Pm.concise.fasta2015-04-17 19:21 20KPrediction: coiled-coil, solvent, alignment
[ ]jp_g8Ps1Pm.concise.pdf2015-04-17 19:21 122KPDF prediction and alignment data
[ ]jp_g8Ps1Pm.concise.ps2015-04-17 19:21 2.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_g8Ps1Pm.fasta2015-04-17 19:15 141 Input query sequence in FASTA format
[ ]jp_g8Ps1Pm.full_MSA.fasta2015-04-17 19:21 73KFull MSA before JPred filters in FASTA
[TXT]jp_g8Ps1Pm.full_MSA.fasta.noGaps.html2015-04-17 19:21 54KFull MSA before JPred filters in FASTA
[TXT]jp_g8Ps1Pm.full_MSA.fasta.withGaps.html2015-04-17 19:21 392KFull MSA before JPred filters in FASTA
[ ]jp_g8Ps1Pm.hmm2015-04-17 19:21 24KHHMer2 profile of the alignment
[TXT]jp_g8Ps1Pm.html2015-04-17 19:21 55KHTML prediction and alignment data
[ ]jp_g8Ps1Pm.input2015-04-17 17:48 134 Raw input data for analysis
[ ]jp_g8Ps1Pm.jalview2015-04-17 19:21 3.4KJalview annotation file for alignment
[ ]jp_g8Ps1Pm.jnet2015-04-17 19:21 4.7KJnet secondary structure output
[TXT]jp_g8Ps1Pm.profile2015-04-17 19:20 21KPSIBLAST profile from alignment
[ ]jp_g8Ps1Pm.pssm2015-04-17 19:21 27KPSIBLAST PSSM for Jnet
[TXT]jp_g8Ps1Pm.results.html2016-02-15 12:17 60KJPred results page
[TXT]jp_g8Ps1Pm.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_g8Ps1Pm.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_g8Ps1Pm.seq2015-04-17 17:48 141 Sequence data file
[TXT]jp_g8Ps1Pm.simple.html2015-04-17 19:21 1.3KBrief HTML: sequence and prediction only
[TXT]jp_g8Ps1Pm.svg.html2015-04-17 19:21 52KJalview SVG summary of results
[ ]jp_g8Ps1Pm.tar.gz2015-04-17 19:21 276KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.