JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:23 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1gqia2.name2015-04-17 17:13 0 Job name flag file
[ ]jp_u_nyAWX.align2015-04-17 18:22 182KPSIBLAST alignment in FASTA format
[TXT]jp_u_nyAWX.als2015-04-17 18:22 2.8KAlscript command file for PS/PDF output
[ ]jp_u_nyAWX.blast.gz2015-04-17 18:22 495KCompressed PSIBLAST output file
[TXT]jp_u_nyAWX.coils.csv2015-04-17 18:22 912 COILS output in CSV format
[ ]jp_u_nyAWX.coilseq.lupas_142015-04-17 18:22 6.2KCOILS output, window length 14
[ ]jp_u_nyAWX.coilseq.lupas_212015-04-17 18:22 6.2KCOILS output, window length 21
[ ]jp_u_nyAWX.coilseq.lupas_282015-04-17 18:22 6.2KCOILS output, window length 28
[ ]jp_u_nyAWX.concise2015-04-17 18:22 354KPrediction: coiled-coil, solvent, alignment
[ ]jp_u_nyAWX.concise.blc2015-04-17 18:22 181KBLC format prediction and alignment data
[ ]jp_u_nyAWX.concise.fasta2015-04-17 18:22 184KPrediction: coiled-coil, solvent, alignment
[ ]jp_u_nyAWX.concise.pdf2015-04-17 18:23 1.1MPDF prediction and alignment data
[ ]jp_u_nyAWX.concise.ps2015-04-17 18:22 21MPrediction: coiled-coil, solvent, alignment
[ ]jp_u_nyAWX.fasta2015-04-17 18:16 162 Input query sequence in FASTA format
[ ]jp_u_nyAWX.full_MSA.fasta2015-04-17 18:22 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_u_nyAWX.full_MSA.fasta.noGaps.html2015-04-17 18:23 342KFull MSA before JPred filters in FASTA
[TXT]jp_u_nyAWX.full_MSA.fasta.withGaps.html2015-04-17 18:23 4.8MFull MSA before JPred filters in FASTA
[ ]jp_u_nyAWX.hmm2015-04-17 18:22 28KHHMer2 profile of the alignment
[TXT]jp_u_nyAWX.html2015-04-17 18:22 407KHTML prediction and alignment data
[ ]jp_u_nyAWX.input2015-04-17 17:13 154 Raw input data for analysis
[ ]jp_u_nyAWX.jalview2015-04-17 18:22 3.8KJalview annotation file for alignment
[ ]jp_u_nyAWX.jnet2015-04-17 18:22 5.4KJnet secondary structure output
[TXT]jp_u_nyAWX.profile2015-04-17 18:20 24KPSIBLAST profile from alignment
[ ]jp_u_nyAWX.pssm2015-04-17 18:22 32KPSIBLAST PSSM for Jnet
[TXT]jp_u_nyAWX.results.html2016-02-15 12:17 68KJPred results page
[TXT]jp_u_nyAWX.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_u_nyAWX.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_u_nyAWX.seq2015-04-17 17:13 162 Sequence data file
[TXT]jp_u_nyAWX.simple.html2015-04-17 18:22 1.4KBrief HTML: sequence and prediction only
[TXT]jp_u_nyAWX.svg.html2015-04-17 18:23 60KJalview SVG summary of results
[ ]jp_u_nyAWX.tar.gz2015-04-17 18:23 2.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.