JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:24 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1h4xa_.name2015-04-17 17:49 0 Job name flag file
[ ]jp_zC3305H.align2015-04-17 19:24 119KPSIBLAST alignment in FASTA format
[TXT]jp_zC3305H.als2015-04-17 19:24 2.6KAlscript command file for PS/PDF output
[ ]jp_zC3305H.blast.gz2015-04-17 19:22 3.6MCompressed PSIBLAST output file
[TXT]jp_zC3305H.coils.csv2015-04-17 19:24 696 COILS output in CSV format
[ ]jp_zC3305H.coilseq.lupas_142015-04-17 19:24 4.7KCOILS output, window length 14
[ ]jp_zC3305H.coilseq.lupas_212015-04-17 19:24 4.7KCOILS output, window length 21
[ ]jp_zC3305H.coilseq.lupas_282015-04-17 19:24 4.7KCOILS output, window length 28
[ ]jp_zC3305H.concise2015-04-17 19:24 230KPrediction: coiled-coil, solvent, alignment
[ ]jp_zC3305H.concise.blc2015-04-17 19:24 119KBLC format prediction and alignment data
[ ]jp_zC3305H.concise.fasta2015-04-17 19:24 120KPrediction: coiled-coil, solvent, alignment
[ ]jp_zC3305H.concise.pdf2015-04-17 19:24 823KPDF prediction and alignment data
[ ]jp_zC3305H.concise.ps2015-04-17 19:24 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_zC3305H.fasta2015-04-17 19:17 125 Input query sequence in FASTA format
[ ]jp_zC3305H.full_MSA.fasta2015-04-17 19:23 10MFull MSA before JPred filters in FASTA
[TXT]jp_zC3305H.full_MSA.fasta.noGaps.html2015-04-17 19:24 2.4MFull MSA before JPred filters in FASTA
[TXT]jp_zC3305H.full_MSA.fasta.withGaps.html2015-04-17 19:24 34MFull MSA before JPred filters in FASTA
[ ]jp_zC3305H.hmm2015-04-17 19:24 21KHHMer2 profile of the alignment
[TXT]jp_zC3305H.html2015-04-17 19:24 310KHTML prediction and alignment data
[ ]jp_zC3305H.input2015-04-17 17:49 118 Raw input data for analysis
[ ]jp_zC3305H.jalview2015-04-17 19:24 3.1KJalview annotation file for alignment
[ ]jp_zC3305H.jnet2015-04-17 19:24 4.1KJnet secondary structure output
[TXT]jp_zC3305H.profile2015-04-17 19:20 18KPSIBLAST profile from alignment
[ ]jp_zC3305H.pssm2015-04-17 19:24 24KPSIBLAST PSSM for Jnet
[TXT]jp_zC3305H.results.html2016-02-15 12:17 55KJPred results page
[TXT]jp_zC3305H.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_zC3305H.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_zC3305H.seq2015-04-17 17:49 125 Sequence data file
[TXT]jp_zC3305H.simple.html2015-04-17 19:24 1.3KBrief HTML: sequence and prediction only
[TXT]jp_zC3305H.svg.html2015-04-17 19:24 47KJalview SVG summary of results
[ ]jp_zC3305H.tar.gz2015-04-17 19:25 8.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.