JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:17 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1h7ca_.name2015-04-17 19:01 0 Job name flag file
[ ]jp_Rr79C0d.align2015-04-17 21:17 36KPSIBLAST alignment in FASTA format
[TXT]jp_Rr79C0d.als2015-04-17 21:17 1.8KAlscript command file for PS/PDF output
[ ]jp_Rr79C0d.blast.gz2015-04-17 21:17 146KCompressed PSIBLAST output file
[TXT]jp_Rr79C0d.coils.csv2015-04-17 21:17 648 COILS output in CSV format
[ ]jp_Rr79C0d.coilseq.lupas_142015-04-17 21:17 4.3KCOILS output, window length 14
[ ]jp_Rr79C0d.coilseq.lupas_212015-04-17 21:17 4.3KCOILS output, window length 21
[ ]jp_Rr79C0d.coilseq.lupas_282015-04-17 21:17 4.3KCOILS output, window length 28
[ ]jp_Rr79C0d.concise2015-04-17 21:17 72KPrediction: coiled-coil, solvent, alignment
[ ]jp_Rr79C0d.concise.blc2015-04-17 21:17 37KBLC format prediction and alignment data
[ ]jp_Rr79C0d.concise.fasta2015-04-17 21:17 37KPrediction: coiled-coil, solvent, alignment
[ ]jp_Rr79C0d.concise.pdf2015-04-17 21:17 226KPDF prediction and alignment data
[ ]jp_Rr79C0d.concise.ps2015-04-17 21:17 4.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_Rr79C0d.fasta2015-04-17 21:14 117 Input query sequence in FASTA format
[ ]jp_Rr79C0d.full_MSA.fasta2015-04-17 21:17 221KFull MSA before JPred filters in FASTA
[TXT]jp_Rr79C0d.full_MSA.fasta.noGaps.html2015-04-17 21:17 104KFull MSA before JPred filters in FASTA
[TXT]jp_Rr79C0d.full_MSA.fasta.withGaps.html2015-04-17 21:17 724KFull MSA before JPred filters in FASTA
[ ]jp_Rr79C0d.hmm2015-04-17 21:17 19KHHMer2 profile of the alignment
[TXT]jp_Rr79C0d.html2015-04-17 21:17 107KHTML prediction and alignment data
[ ]jp_Rr79C0d.input2015-04-17 19:01 110 Raw input data for analysis
[ ]jp_Rr79C0d.jalview2015-04-17 21:17 3.0KJalview annotation file for alignment
[ ]jp_Rr79C0d.jnet2015-04-17 21:17 3.8KJnet secondary structure output
[TXT]jp_Rr79C0d.profile2015-04-17 21:16 17KPSIBLAST profile from alignment
[ ]jp_Rr79C0d.pssm2015-04-17 21:17 22KPSIBLAST PSSM for Jnet
[TXT]jp_Rr79C0d.results.html2016-02-15 12:17 50KJPred results page
[TXT]jp_Rr79C0d.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Rr79C0d.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Rr79C0d.seq2015-04-17 19:01 117 Sequence data file
[TXT]jp_Rr79C0d.simple.html2015-04-17 21:17 1.1KBrief HTML: sequence and prediction only
[TXT]jp_Rr79C0d.svg.html2015-04-17 21:17 42KJalview SVG summary of results
[ ]jp_Rr79C0d.tar.gz2015-04-17 21:17 533KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.