JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:53 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1h99a1.name2015-04-17 15:20 0 Job name flag file
[ ]jp_KvSrPx1.align2015-04-17 15:53 126KPSIBLAST alignment in FASTA format
[TXT]jp_KvSrPx1.als2015-04-17 15:53 1.9KAlscript command file for PS/PDF output
[ ]jp_KvSrPx1.blast.gz2015-04-17 15:52 1.8MCompressed PSIBLAST output file
[TXT]jp_KvSrPx1.coils.csv2015-04-17 15:53 720 COILS output in CSV format
[ ]jp_KvSrPx1.coilseq.lupas_142015-04-17 15:53 4.8KCOILS output, window length 14
[ ]jp_KvSrPx1.coilseq.lupas_212015-04-17 15:53 4.8KCOILS output, window length 21
[ ]jp_KvSrPx1.coilseq.lupas_282015-04-17 15:53 4.8KCOILS output, window length 28
[ ]jp_KvSrPx1.concise2015-04-17 15:53 244KPrediction: coiled-coil, solvent, alignment
[ ]jp_KvSrPx1.concise.blc2015-04-17 15:53 126KBLC format prediction and alignment data
[ ]jp_KvSrPx1.concise.fasta2015-04-17 15:53 127KPrediction: coiled-coil, solvent, alignment
[ ]jp_KvSrPx1.concise.pdf2015-04-17 15:53 895KPDF prediction and alignment data
[ ]jp_KvSrPx1.concise.ps2015-04-17 15:53 15MPrediction: coiled-coil, solvent, alignment
[ ]jp_KvSrPx1.fasta2015-04-17 15:20 129 Input query sequence in FASTA format
[ ]jp_KvSrPx1.full_MSA.fasta2015-04-17 15:52 2.7MFull MSA before JPred filters in FASTA
[TXT]jp_KvSrPx1.full_MSA.fasta.noGaps.html2015-04-17 15:53 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_KvSrPx1.full_MSA.fasta.withGaps.html2015-04-17 15:53 15MFull MSA before JPred filters in FASTA
[ ]jp_KvSrPx1.hmm2015-04-17 15:53 22KHHMer2 profile of the alignment
[TXT]jp_KvSrPx1.html2015-04-17 15:53 323KHTML prediction and alignment data
[ ]jp_KvSrPx1.input2015-04-17 15:20 122 Raw input data for analysis
[ ]jp_KvSrPx1.jalview2015-04-17 15:53 3.2KJalview annotation file for alignment
[ ]jp_KvSrPx1.jnet2015-04-17 15:53 4.3KJnet secondary structure output
[TXT]jp_KvSrPx1.profile2015-04-17 15:51 19KPSIBLAST profile from alignment
[ ]jp_KvSrPx1.pssm2015-04-17 15:53 25KPSIBLAST PSSM for Jnet
[TXT]jp_KvSrPx1.results.html2016-02-15 12:17 55KJPred results page
[TXT]jp_KvSrPx1.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_KvSrPx1.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_KvSrPx1.seq2015-04-17 15:20 129 Sequence data file
[TXT]jp_KvSrPx1.simple.html2015-04-17 15:53 1.2KBrief HTML: sequence and prediction only
[TXT]jp_KvSrPx1.svg.html2015-04-17 15:53 46KJalview SVG summary of results
[ ]jp_KvSrPx1.tar.gz2015-04-17 15:53 4.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.