JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:17 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1i2ta_.name2015-04-17 19:01 0 Job name flag file
[ ]jp_w4MyhqY.align2015-04-17 21:17 25KPSIBLAST alignment in FASTA format
[TXT]jp_w4MyhqY.als2015-04-17 21:17 1.8KAlscript command file for PS/PDF output
[ ]jp_w4MyhqY.blast.gz2015-04-17 21:17 169KCompressed PSIBLAST output file
[TXT]jp_w4MyhqY.coils.csv2015-04-17 21:17 396 COILS output in CSV format
[ ]jp_w4MyhqY.coilseq.lupas_142015-04-17 21:17 2.6KCOILS output, window length 14
[ ]jp_w4MyhqY.coilseq.lupas_212015-04-17 21:17 2.6KCOILS output, window length 21
[ ]jp_w4MyhqY.coilseq.lupas_282015-04-17 21:17 2.6KCOILS output, window length 28
[ ]jp_w4MyhqY.concise2015-04-17 21:17 49KPrediction: coiled-coil, solvent, alignment
[ ]jp_w4MyhqY.concise.blc2015-04-17 21:17 26KBLC format prediction and alignment data
[ ]jp_w4MyhqY.concise.fasta2015-04-17 21:17 26KPrediction: coiled-coil, solvent, alignment
[ ]jp_w4MyhqY.concise.pdf2015-04-17 21:17 156KPDF prediction and alignment data
[ ]jp_w4MyhqY.concise.ps2015-04-17 21:17 2.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_w4MyhqY.fasta2015-04-17 21:15 74 Input query sequence in FASTA format
[ ]jp_w4MyhqY.full_MSA.fasta2015-04-17 21:17 175KFull MSA before JPred filters in FASTA
[TXT]jp_w4MyhqY.full_MSA.fasta.noGaps.html2015-04-17 21:17 180KFull MSA before JPred filters in FASTA
[TXT]jp_w4MyhqY.full_MSA.fasta.withGaps.html2015-04-17 21:17 897KFull MSA before JPred filters in FASTA
[ ]jp_w4MyhqY.hmm2015-04-17 21:17 11KHHMer2 profile of the alignment
[TXT]jp_w4MyhqY.html2015-04-17 21:17 95KHTML prediction and alignment data
[ ]jp_w4MyhqY.input2015-04-17 19:01 68 Raw input data for analysis
[ ]jp_w4MyhqY.jalview2015-04-17 21:17 2.1KJalview annotation file for alignment
[ ]jp_w4MyhqY.jnet2015-04-17 21:17 2.3KJnet secondary structure output
[TXT]jp_w4MyhqY.profile2015-04-17 21:16 10KPSIBLAST profile from alignment
[ ]jp_w4MyhqY.pssm2015-04-17 21:17 13KPSIBLAST PSSM for Jnet
[TXT]jp_w4MyhqY.results.html2016-02-15 12:17 36KJPred results page
[TXT]jp_w4MyhqY.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_w4MyhqY.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_w4MyhqY.seq2015-04-17 19:01 74 Sequence data file
[TXT]jp_w4MyhqY.simple.html2015-04-17 21:17 1.1KBrief HTML: sequence and prediction only
[TXT]jp_w4MyhqY.svg.html2015-04-17 21:17 28KJalview SVG summary of results
[ ]jp_w4MyhqY.tar.gz2015-04-17 21:17 452KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.