JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:50 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1i3ja_.name2015-04-17 15:38 0 Job name flag file
[ ]jp_b1xbBGs.align2015-04-17 15:50 29KPSIBLAST alignment in FASTA format
[TXT]jp_b1xbBGs.als2015-04-17 15:50 2.3KAlscript command file for PS/PDF output
[ ]jp_b1xbBGs.blast.gz2015-04-17 15:50 84KCompressed PSIBLAST output file
[TXT]jp_b1xbBGs.coils.csv2015-04-17 15:50 606 COILS output in CSV format
[ ]jp_b1xbBGs.coilseq.lupas_142015-04-17 15:50 4.0KCOILS output, window length 14
[ ]jp_b1xbBGs.coilseq.lupas_212015-04-17 15:50 4.0KCOILS output, window length 21
[ ]jp_b1xbBGs.coilseq.lupas_282015-04-17 15:50 4.0KCOILS output, window length 28
[ ]jp_b1xbBGs.concise2015-04-17 15:50 59KPrediction: coiled-coil, solvent, alignment
[ ]jp_b1xbBGs.concise.blc2015-04-17 15:50 30KBLC format prediction and alignment data
[ ]jp_b1xbBGs.concise.fasta2015-04-17 15:50 30KPrediction: coiled-coil, solvent, alignment
[ ]jp_b1xbBGs.concise.pdf2015-04-17 15:50 156KPDF prediction and alignment data
[ ]jp_b1xbBGs.concise.ps2015-04-17 15:50 3.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_b1xbBGs.fasta2015-04-17 15:48 110 Input query sequence in FASTA format
[ ]jp_b1xbBGs.full_MSA.fasta2015-04-17 15:50 377KFull MSA before JPred filters in FASTA
[TXT]jp_b1xbBGs.full_MSA.fasta.noGaps.html2015-04-17 15:50 90KFull MSA before JPred filters in FASTA
[TXT]jp_b1xbBGs.full_MSA.fasta.withGaps.html2015-04-17 15:50 1.1MFull MSA before JPred filters in FASTA
[ ]jp_b1xbBGs.hmm2015-04-17 15:50 18KHHMer2 profile of the alignment
[TXT]jp_b1xbBGs.html2015-04-17 15:50 88KHTML prediction and alignment data
[ ]jp_b1xbBGs.input2015-04-17 15:38 103 Raw input data for analysis
[ ]jp_b1xbBGs.jalview2015-04-17 15:50 2.7KJalview annotation file for alignment
[ ]jp_b1xbBGs.jnet2015-04-17 15:50 3.6KJnet secondary structure output
[TXT]jp_b1xbBGs.profile2015-04-17 15:49 16KPSIBLAST profile from alignment
[ ]jp_b1xbBGs.pssm2015-04-17 15:50 21KPSIBLAST PSSM for Jnet
[TXT]jp_b1xbBGs.results.html2016-02-15 12:17 49KJPred results page
[TXT]jp_b1xbBGs.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_b1xbBGs.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_b1xbBGs.seq2015-04-17 15:38 110 Sequence data file
[TXT]jp_b1xbBGs.simple.html2015-04-17 15:50 1.2KBrief HTML: sequence and prediction only
[TXT]jp_b1xbBGs.svg.html2015-04-17 15:50 41KJalview SVG summary of results
[ ]jp_b1xbBGs.tar.gz2015-04-17 15:50 399KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.