A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:19 | 4.7K | JPred server log file |
| README | 2016-02-15 12:17 | 2.1K | Results file descriptions |
| d1ifra_.name | 2015-04-17 18:24 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_2jpa5_g.align | 2015-04-17 20:19 | 73K | PSIBLAST alignment in FASTA format |
| jp_2jpa5_g.als | 2015-04-17 20:19 | 2.6K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_2jpa5_g.blast.gz | 2015-04-17 20:19 | 377K | Compressed PSIBLAST output file |
| jp_2jpa5_g.coils.csv | 2015-04-17 20:19 | 708 | COILS output in CSV format |
| jp_2jpa5_g.coilseq.lupas_14 | 2015-04-17 20:19 | 4.7K | COILS output, window length 14 |
| jp_2jpa5_g.coilseq.lupas_21 | 2015-04-17 20:19 | 4.7K | COILS output, window length 21 |
| jp_2jpa5_g.coilseq.lupas_28 | 2015-04-17 20:19 | 4.7K | COILS output, window length 28 |
| jp_2jpa5_g.concise | 2015-04-17 20:19 | 143K | Prediction: coiled-coil, solvent, alignment |
| jp_2jpa5_g.concise.blc | 2015-04-17 20:19 | 73K | BLC format prediction and alignment data |
| jp_2jpa5_g.concise.fasta | 2015-04-17 20:19 | 74K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_2jpa5_g.concise.pdf | 2015-04-17 20:19 | 446K | PDF prediction and alignment data |
| jp_2jpa5_g.concise.ps | 2015-04-17 20:19 | 8.1M | Prediction: coiled-coil, solvent, alignment |
| jp_2jpa5_g.fasta | 2015-04-17 20:17 | 127 | Input query sequence in FASTA format |
| jp_2jpa5_g.full_MSA.fasta | 2015-04-17 20:19 | 646K | Full MSA before JPred filters in FASTA |
| jp_2jpa5_g.full_MSA.fasta.noGaps.html | 2015-04-17 20:19 | 241K | Full MSA before JPred filters in FASTA |
| jp_2jpa5_g.full_MSA.fasta.withGaps.html | 2015-04-17 20:19 | 2.8M | Full MSA before JPred filters in FASTA |
| jp_2jpa5_g.hmm | 2015-04-17 20:19 | 21K | HHMer2 profile of the alignment |
| jp_2jpa5_g.html | 2015-04-17 20:19 | 190K | HTML prediction and alignment data |
| jp_2jpa5_g.input | 2015-04-17 18:24 | 120 | Raw input data for analysis |
| jp_2jpa5_g.jalview | 2015-04-17 20:19 | 3.0K | Jalview annotation file for alignment |
| jp_2jpa5_g.jnet | 2015-04-17 20:19 | 4.2K | Jnet secondary structure output |
| jp_2jpa5_g.profile | 2015-04-17 20:18 | 18K | PSIBLAST profile from alignment |
| jp_2jpa5_g.pssm | 2015-04-17 20:19 | 24K | PSIBLAST PSSM for Jnet |
| jp_2jpa5_g.results.html | 2016-02-15 12:17 | 54K | JPred results page |
| jp_2jpa5_g.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_2jpa5_g.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_2jpa5_g.seq | 2015-04-17 18:24 | 127 | Sequence data file |
| jp_2jpa5_g.simple.html | 2015-04-17 20:19 | 1.3K | Brief HTML: sequence and prediction only |
![[TXT]](jp_2jpa5_g.svg.html) | jp_2jpa5_g.svg.html | 2015-04-17 20:19 | 46K | Jalview SVG summary of results |
| jp_2jpa5_g.tar.gz | 2015-04-17 20:19 | 1.2M | Archive containing complete results |
