A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 16:01 | 4.7K | JPred server log file |
| README | 2016-02-15 12:17 | 2.1K | Results file descriptions |
| d1io1a_.name | 2015-04-17 15:21 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_oLnNEG8.align | 2015-04-17 16:00 | 22K | PSIBLAST alignment in FASTA format |
| jp_oLnNEG8.als | 2015-04-17 16:00 | 3.5K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_oLnNEG8.blast.gz | 2015-04-17 15:56 | 9.8M | Compressed PSIBLAST output file |
| jp_oLnNEG8.coils.csv | 2015-04-17 16:00 | 2.3K | COILS output in CSV format |
| jp_oLnNEG8.coilseq.lupas_14 | 2015-04-17 16:00 | 17K | COILS output, window length 14 |
| jp_oLnNEG8.coilseq.lupas_21 | 2015-04-17 16:00 | 17K | COILS output, window length 21 |
| jp_oLnNEG8.coilseq.lupas_28 | 2015-04-17 16:00 | 17K | COILS output, window length 28 |
| jp_oLnNEG8.concise | 2015-04-17 16:00 | 61K | Prediction: coiled-coil, solvent, alignment |
| jp_oLnNEG8.concise.blc | 2015-04-17 16:00 | 28K | BLC format prediction and alignment data |
| jp_oLnNEG8.concise.fasta | 2015-04-17 16:00 | 27K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_oLnNEG8.concise.pdf | 2015-04-17 16:00 | 188K | PDF prediction and alignment data |
| jp_oLnNEG8.concise.ps | 2015-04-17 16:00 | 3.5M | Prediction: coiled-coil, solvent, alignment |
| jp_oLnNEG8.fasta | 2015-04-17 15:21 | 413 | Input query sequence in FASTA format |
| jp_oLnNEG8.full_MSA.fasta | 2015-04-17 16:00 | 11M | Full MSA before JPred filters in FASTA |
| jp_oLnNEG8.full_MSA.fasta.noGaps.html | 2015-04-17 16:00 | 3.4M | Full MSA before JPred filters in FASTA |
| jp_oLnNEG8.full_MSA.fasta.withGaps.html | 2015-04-17 16:00 | 45M | Full MSA before JPred filters in FASTA |
| jp_oLnNEG8.hmm | 2015-04-17 16:00 | 74K | HHMer2 profile of the alignment |
| jp_oLnNEG8.html | 2015-04-17 16:00 | 61K | HTML prediction and alignment data |
| jp_oLnNEG8.input | 2015-04-17 15:21 | 402 | Raw input data for analysis |
| jp_oLnNEG8.jalview | 2015-04-17 16:00 | 8.6K | Jalview annotation file for alignment |
| jp_oLnNEG8.jnet | 2015-04-17 16:00 | 14K | Jnet secondary structure output |
| jp_oLnNEG8.profile | 2015-04-17 15:44 | 63K | PSIBLAST profile from alignment |
| jp_oLnNEG8.pssm | 2015-04-17 16:00 | 85K | PSIBLAST PSSM for Jnet |
| jp_oLnNEG8.results.html | 2016-02-15 12:17 | 159K | JPred results page |
| jp_oLnNEG8.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_oLnNEG8.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_oLnNEG8.seq | 2015-04-17 15:21 | 413 | Sequence data file |
| jp_oLnNEG8.simple.html | 2015-04-17 16:00 | 2.0K | Brief HTML: sequence and prediction only |
![[TXT]](jp_oLnNEG8.svg.html) | jp_oLnNEG8.svg.html | 2015-04-17 16:00 | 151K | Jalview SVG summary of results |
| jp_oLnNEG8.tar.gz | 2015-04-17 16:01 | 14M | Archive containing complete results |
