JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:25 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1ioma_.name2015-04-17 19:01 0 Job name flag file
[ ]jp_0ragZvy.align2015-04-17 21:24 271KPSIBLAST alignment in FASTA format
[TXT]jp_0ragZvy.als2015-04-17 21:24 4.3KAlscript command file for PS/PDF output
[ ]jp_0ragZvy.blast.gz2015-04-17 21:23 9.8MCompressed PSIBLAST output file
[TXT]jp_0ragZvy.coils.csv2015-04-17 21:24 2.2KCOILS output in CSV format
[ ]jp_0ragZvy.coilseq.lupas_142015-04-17 21:24 16KCOILS output, window length 14
[ ]jp_0ragZvy.coilseq.lupas_212015-04-17 21:24 16KCOILS output, window length 21
[ ]jp_0ragZvy.coilseq.lupas_282015-04-17 21:24 16KCOILS output, window length 28
[ ]jp_0ragZvy.concise2015-04-17 21:24 544KPrediction: coiled-coil, solvent, alignment
[ ]jp_0ragZvy.concise.blc2015-04-17 21:24 273KBLC format prediction and alignment data
[ ]jp_0ragZvy.concise.fasta2015-04-17 21:24 275KPrediction: coiled-coil, solvent, alignment
[ ]jp_0ragZvy.concise.pdf2015-04-17 21:25 1.9MPDF prediction and alignment data
[ ]jp_0ragZvy.concise.ps2015-04-17 21:24 34MPrediction: coiled-coil, solvent, alignment
[ ]jp_0ragZvy.fasta2015-04-17 21:15 392 Input query sequence in FASTA format
[ ]jp_0ragZvy.full_MSA.fasta2015-04-17 21:24 17MFull MSA before JPred filters in FASTA
[TXT]jp_0ragZvy.full_MSA.fasta.noGaps.html2015-04-17 21:25 2.5MFull MSA before JPred filters in FASTA
[TXT]jp_0ragZvy.full_MSA.fasta.withGaps.html2015-04-17 21:25 56MFull MSA before JPred filters in FASTA
[ ]jp_0ragZvy.hmm2015-04-17 21:24 70KHHMer2 profile of the alignment
[TXT]jp_0ragZvy.html2015-04-17 21:24 442KHTML prediction and alignment data
[ ]jp_0ragZvy.input2015-04-17 19:01 381 Raw input data for analysis
[ ]jp_0ragZvy.jalview2015-04-17 21:24 8.4KJalview annotation file for alignment
[ ]jp_0ragZvy.jnet2015-04-17 21:24 14KJnet secondary structure output
[TXT]jp_0ragZvy.profile2015-04-17 21:21 60KPSIBLAST profile from alignment
[ ]jp_0ragZvy.pssm2015-04-17 21:24 80KPSIBLAST PSSM for Jnet
[TXT]jp_0ragZvy.results.html2016-02-15 12:17 157KJPred results page
[TXT]jp_0ragZvy.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_0ragZvy.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_0ragZvy.seq2015-04-17 19:01 392 Sequence data file
[TXT]jp_0ragZvy.simple.html2015-04-17 21:24 2.1KBrief HTML: sequence and prediction only
[TXT]jp_0ragZvy.svg.html2015-04-17 21:25 149KJalview SVG summary of results
[ ]jp_0ragZvy.tar.gz2015-04-17 21:25 18MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.