JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:20 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1ix9a1.name2015-04-17 15:58 0 Job name flag file
[ ]jp_yd63lAN.align2015-04-17 16:19 69KPSIBLAST alignment in FASTA format
[TXT]jp_yd63lAN.als2015-04-17 16:19 1.8KAlscript command file for PS/PDF output
[ ]jp_yd63lAN.blast.gz2015-04-17 16:19 1.3MCompressed PSIBLAST output file
[TXT]jp_yd63lAN.coils.csv2015-04-17 16:19 570 COILS output in CSV format
[ ]jp_yd63lAN.coilseq.lupas_142015-04-17 16:19 3.8KCOILS output, window length 14
[ ]jp_yd63lAN.coilseq.lupas_212015-04-17 16:19 3.8KCOILS output, window length 21
[ ]jp_yd63lAN.coilseq.lupas_282015-04-17 16:19 3.8KCOILS output, window length 28
[ ]jp_yd63lAN.concise2015-04-17 16:19 134KPrediction: coiled-coil, solvent, alignment
[ ]jp_yd63lAN.concise.blc2015-04-17 16:19 70KBLC format prediction and alignment data
[ ]jp_yd63lAN.concise.fasta2015-04-17 16:19 70KPrediction: coiled-coil, solvent, alignment
[ ]jp_yd63lAN.concise.pdf2015-04-17 16:19 442KPDF prediction and alignment data
[ ]jp_yd63lAN.concise.ps2015-04-17 16:19 7.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_yd63lAN.fasta2015-04-17 16:17 104 Input query sequence in FASTA format
[ ]jp_yd63lAN.full_MSA.fasta2015-04-17 16:19 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_yd63lAN.full_MSA.fasta.noGaps.html2015-04-17 16:19 893KFull MSA before JPred filters in FASTA
[TXT]jp_yd63lAN.full_MSA.fasta.withGaps.html2015-04-17 16:19 7.4MFull MSA before JPred filters in FASTA
[ ]jp_yd63lAN.hmm2015-04-17 16:19 17KHHMer2 profile of the alignment
[TXT]jp_yd63lAN.html2015-04-17 16:19 204KHTML prediction and alignment data
[ ]jp_yd63lAN.input2015-04-17 15:58 97 Raw input data for analysis
[ ]jp_yd63lAN.jalview2015-04-17 16:19 2.6KJalview annotation file for alignment
[ ]jp_yd63lAN.jnet2015-04-17 16:19 3.4KJnet secondary structure output
[TXT]jp_yd63lAN.profile2015-04-17 16:18 15KPSIBLAST profile from alignment
[ ]jp_yd63lAN.pssm2015-04-17 16:19 19KPSIBLAST PSSM for Jnet
[TXT]jp_yd63lAN.results.html2016-02-15 12:17 45KJPred results page
[TXT]jp_yd63lAN.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_yd63lAN.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_yd63lAN.seq2015-04-17 15:58 104 Sequence data file
[TXT]jp_yd63lAN.simple.html2015-04-17 16:19 1.1KBrief HTML: sequence and prediction only
[TXT]jp_yd63lAN.svg.html2015-04-17 16:20 37KJalview SVG summary of results
[ ]jp_yd63lAN.tar.gz2015-04-17 16:20 2.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.