JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:19 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1j09a1.name2015-04-17 15:21 0 Job name flag file
[ ]jp_y1ifIRg.align2015-04-17 16:19 200KPSIBLAST alignment in FASTA format
[TXT]jp_y1ifIRg.als2015-04-17 16:19 2.8KAlscript command file for PS/PDF output
[ ]jp_y1ifIRg.blast.gz2015-04-17 16:17 4.2MCompressed PSIBLAST output file
[TXT]jp_y1ifIRg.coils.csv2015-04-17 16:19 1.0KCOILS output in CSV format
[ ]jp_y1ifIRg.coilseq.lupas_142015-04-17 16:19 6.8KCOILS output, window length 14
[ ]jp_y1ifIRg.coilseq.lupas_212015-04-17 16:19 6.8KCOILS output, window length 21
[ ]jp_y1ifIRg.coilseq.lupas_282015-04-17 16:19 6.8KCOILS output, window length 28
[ ]jp_y1ifIRg.concise2015-04-17 16:19 390KPrediction: coiled-coil, solvent, alignment
[ ]jp_y1ifIRg.concise.blc2015-04-17 16:19 199KBLC format prediction and alignment data
[ ]jp_y1ifIRg.concise.fasta2015-04-17 16:19 202KPrediction: coiled-coil, solvent, alignment
[ ]jp_y1ifIRg.concise.pdf2015-04-17 16:19 1.4MPDF prediction and alignment data
[ ]jp_y1ifIRg.concise.ps2015-04-17 16:19 25MPrediction: coiled-coil, solvent, alignment
[ ]jp_y1ifIRg.fasta2015-04-17 15:21 178 Input query sequence in FASTA format
[ ]jp_y1ifIRg.full_MSA.fasta2015-04-17 16:18 7.4MFull MSA before JPred filters in FASTA
[TXT]jp_y1ifIRg.full_MSA.fasta.noGaps.html2015-04-17 16:19 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_y1ifIRg.full_MSA.fasta.withGaps.html2015-04-17 16:19 20MFull MSA before JPred filters in FASTA
[ ]jp_y1ifIRg.hmm2015-04-17 16:19 31KHHMer2 profile of the alignment
[TXT]jp_y1ifIRg.html2015-04-17 16:19 430KHTML prediction and alignment data
[ ]jp_y1ifIRg.input2015-04-17 15:21 170 Raw input data for analysis
[ ]jp_y1ifIRg.jalview2015-04-17 16:19 4.2KJalview annotation file for alignment
[ ]jp_y1ifIRg.jnet2015-04-17 16:19 6.0KJnet secondary structure output
[TXT]jp_y1ifIRg.profile2015-04-17 15:54 26KPSIBLAST profile from alignment
[ ]jp_y1ifIRg.pssm2015-04-17 16:19 35KPSIBLAST PSSM for Jnet
[TXT]jp_y1ifIRg.results.html2016-02-15 12:17 76KJPred results page
[TXT]jp_y1ifIRg.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_y1ifIRg.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_y1ifIRg.seq2015-04-17 15:21 178 Sequence data file
[TXT]jp_y1ifIRg.simple.html2015-04-17 16:19 1.4KBrief HTML: sequence and prediction only
[TXT]jp_y1ifIRg.svg.html2015-04-17 16:19 68KJalview SVG summary of results
[ ]jp_y1ifIRg.tar.gz2015-04-17 16:20 8.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.