JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:20 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1j27a_.name2015-04-17 16:35 0 Job name flag file
[ ]jp_UpSsGy7.align2015-04-17 17:20 54KPSIBLAST alignment in FASTA format
[TXT]jp_UpSsGy7.als2015-04-17 17:20 2.1KAlscript command file for PS/PDF output
[ ]jp_UpSsGy7.blast.gz2015-04-17 17:20 115KCompressed PSIBLAST output file
[TXT]jp_UpSsGy7.coils.csv2015-04-17 17:20 618 COILS output in CSV format
[ ]jp_UpSsGy7.coilseq.lupas_142015-04-17 17:20 4.1KCOILS output, window length 14
[ ]jp_UpSsGy7.coilseq.lupas_212015-04-17 17:20 4.1KCOILS output, window length 21
[ ]jp_UpSsGy7.coilseq.lupas_282015-04-17 17:20 4.1KCOILS output, window length 28
[ ]jp_UpSsGy7.concise2015-04-17 17:20 107KPrediction: coiled-coil, solvent, alignment
[ ]jp_UpSsGy7.concise.blc2015-04-17 17:20 55KBLC format prediction and alignment data
[ ]jp_UpSsGy7.concise.fasta2015-04-17 17:20 56KPrediction: coiled-coil, solvent, alignment
[ ]jp_UpSsGy7.concise.pdf2015-04-17 17:20 368KPDF prediction and alignment data
[ ]jp_UpSsGy7.concise.ps2015-04-17 17:20 6.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_UpSsGy7.fasta2015-04-17 17:15 112 Input query sequence in FASTA format
[ ]jp_UpSsGy7.full_MSA.fasta2015-04-17 17:20 122KFull MSA before JPred filters in FASTA
[TXT]jp_UpSsGy7.full_MSA.fasta.noGaps.html2015-04-17 17:20 154KFull MSA before JPred filters in FASTA
[TXT]jp_UpSsGy7.full_MSA.fasta.withGaps.html2015-04-17 17:20 674KFull MSA before JPred filters in FASTA
[ ]jp_UpSsGy7.hmm2015-04-17 17:20 18KHHMer2 profile of the alignment
[TXT]jp_UpSsGy7.html2015-04-17 17:20 157KHTML prediction and alignment data
[ ]jp_UpSsGy7.input2015-04-17 16:35 105 Raw input data for analysis
[ ]jp_UpSsGy7.jalview2015-04-17 17:20 2.8KJalview annotation file for alignment
[ ]jp_UpSsGy7.jnet2015-04-17 17:20 3.7KJnet secondary structure output
[TXT]jp_UpSsGy7.profile2015-04-17 17:18 16KPSIBLAST profile from alignment
[ ]jp_UpSsGy7.pssm2015-04-17 17:20 21KPSIBLAST PSSM for Jnet
[TXT]jp_UpSsGy7.results.html2016-02-15 12:17 49KJPred results page
[TXT]jp_UpSsGy7.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_UpSsGy7.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_UpSsGy7.seq2015-04-17 16:35 112 Sequence data file
[TXT]jp_UpSsGy7.simple.html2015-04-17 17:20 1.2KBrief HTML: sequence and prediction only
[TXT]jp_UpSsGy7.svg.html2015-04-17 17:20 40KJalview SVG summary of results
[ ]jp_UpSsGy7.tar.gz2015-04-17 17:20 683KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.