JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:11 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1j3wa_.name2015-04-17 15:21 0 Job name flag file
[ ]jp_XUTVLvu.align2015-04-17 16:11 78KPSIBLAST alignment in FASTA format
[TXT]jp_XUTVLvu.als2015-04-17 16:11 2.5KAlscript command file for PS/PDF output
[ ]jp_XUTVLvu.blast.gz2015-04-17 16:10 125KCompressed PSIBLAST output file
[TXT]jp_XUTVLvu.coils.csv2015-04-17 16:11 834 COILS output in CSV format
[ ]jp_XUTVLvu.coilseq.lupas_142015-04-17 16:11 5.6KCOILS output, window length 14
[ ]jp_XUTVLvu.coilseq.lupas_212015-04-17 16:11 5.6KCOILS output, window length 21
[ ]jp_XUTVLvu.coilseq.lupas_282015-04-17 16:11 5.6KCOILS output, window length 28
[ ]jp_XUTVLvu.concise2015-04-17 16:11 155KPrediction: coiled-coil, solvent, alignment
[ ]jp_XUTVLvu.concise.blc2015-04-17 16:11 79KBLC format prediction and alignment data
[ ]jp_XUTVLvu.concise.fasta2015-04-17 16:11 80KPrediction: coiled-coil, solvent, alignment
[ ]jp_XUTVLvu.concise.pdf2015-04-17 16:11 525KPDF prediction and alignment data
[ ]jp_XUTVLvu.concise.ps2015-04-17 16:11 9.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_XUTVLvu.fasta2015-04-17 15:21 148 Input query sequence in FASTA format
[ ]jp_XUTVLvu.full_MSA.fasta2015-04-17 16:10 282KFull MSA before JPred filters in FASTA
[TXT]jp_XUTVLvu.full_MSA.fasta.noGaps.html2015-04-17 16:11 220KFull MSA before JPred filters in FASTA
[TXT]jp_XUTVLvu.full_MSA.fasta.withGaps.html2015-04-17 16:11 1.7MFull MSA before JPred filters in FASTA
[ ]jp_XUTVLvu.hmm2015-04-17 16:11 25KHHMer2 profile of the alignment
[TXT]jp_XUTVLvu.html2015-04-17 16:11 194KHTML prediction and alignment data
[ ]jp_XUTVLvu.input2015-04-17 15:21 141 Raw input data for analysis
[ ]jp_XUTVLvu.jalview2015-04-17 16:11 3.6KJalview annotation file for alignment
[ ]jp_XUTVLvu.jnet2015-04-17 16:11 5.0KJnet secondary structure output
[TXT]jp_XUTVLvu.profile2015-04-17 16:03 22KPSIBLAST profile from alignment
[ ]jp_XUTVLvu.pssm2015-04-17 16:11 29KPSIBLAST PSSM for Jnet
[TXT]jp_XUTVLvu.results.html2016-02-15 12:17 62KJPred results page
[TXT]jp_XUTVLvu.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_XUTVLvu.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_XUTVLvu.seq2015-04-17 15:21 148 Sequence data file
[TXT]jp_XUTVLvu.simple.html2015-04-17 16:11 1.3KBrief HTML: sequence and prediction only
[TXT]jp_XUTVLvu.svg.html2015-04-17 16:11 54KJalview SVG summary of results
[ ]jp_XUTVLvu.tar.gz2015-04-17 16:11 1.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.