JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:18 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1j5ya2.name2015-04-17 19:02 0 Job name flag file
[ ]jp_xJoF4Dm.align2015-04-17 21:18 59KPSIBLAST alignment in FASTA format
[TXT]jp_xJoF4Dm.als2015-04-17 21:18 2.4KAlscript command file for PS/PDF output
[ ]jp_xJoF4Dm.blast.gz2015-04-17 21:18 178KCompressed PSIBLAST output file
[TXT]jp_xJoF4Dm.coils.csv2015-04-17 21:18 672 COILS output in CSV format
[ ]jp_xJoF4Dm.coilseq.lupas_142015-04-17 21:18 4.5KCOILS output, window length 14
[ ]jp_xJoF4Dm.coilseq.lupas_212015-04-17 21:18 4.5KCOILS output, window length 21
[ ]jp_xJoF4Dm.coilseq.lupas_282015-04-17 21:18 4.5KCOILS output, window length 28
[ ]jp_xJoF4Dm.concise2015-04-17 21:18 116KPrediction: coiled-coil, solvent, alignment
[ ]jp_xJoF4Dm.concise.blc2015-04-17 21:18 60KBLC format prediction and alignment data
[ ]jp_xJoF4Dm.concise.fasta2015-04-17 21:18 60KPrediction: coiled-coil, solvent, alignment
[ ]jp_xJoF4Dm.concise.pdf2015-04-17 21:18 407KPDF prediction and alignment data
[ ]jp_xJoF4Dm.concise.ps2015-04-17 21:18 6.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_xJoF4Dm.fasta2015-04-17 21:15 121 Input query sequence in FASTA format
[ ]jp_xJoF4Dm.full_MSA.fasta2015-04-17 21:18 125KFull MSA before JPred filters in FASTA
[TXT]jp_xJoF4Dm.full_MSA.fasta.noGaps.html2015-04-17 21:18 149KFull MSA before JPred filters in FASTA
[TXT]jp_xJoF4Dm.full_MSA.fasta.withGaps.html2015-04-17 21:18 654KFull MSA before JPred filters in FASTA
[ ]jp_xJoF4Dm.hmm2015-04-17 21:18 20KHHMer2 profile of the alignment
[TXT]jp_xJoF4Dm.html2015-04-17 21:18 163KHTML prediction and alignment data
[ ]jp_xJoF4Dm.input2015-04-17 19:02 114 Raw input data for analysis
[ ]jp_xJoF4Dm.jalview2015-04-17 21:18 3.0KJalview annotation file for alignment
[ ]jp_xJoF4Dm.jnet2015-04-17 21:18 4.0KJnet secondary structure output
[TXT]jp_xJoF4Dm.profile2015-04-17 21:17 17KPSIBLAST profile from alignment
[ ]jp_xJoF4Dm.pssm2015-04-17 21:18 23KPSIBLAST PSSM for Jnet
[TXT]jp_xJoF4Dm.results.html2016-02-15 12:17 53KJPred results page
[TXT]jp_xJoF4Dm.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_xJoF4Dm.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_xJoF4Dm.seq2015-04-17 19:02 121 Sequence data file
[TXT]jp_xJoF4Dm.simple.html2015-04-17 21:18 1.3KBrief HTML: sequence and prediction only
[TXT]jp_xJoF4Dm.svg.html2015-04-17 21:18 45KJalview SVG summary of results
[ ]jp_xJoF4Dm.tar.gz2015-04-17 21:18 795KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.