JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:59 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1j98a_.name2015-04-17 15:59 0 Job name flag file
[ ]jp_VYqPMyc.align2015-04-17 16:58 69KPSIBLAST alignment in FASTA format
[TXT]jp_VYqPMyc.als2015-04-17 16:58 2.5KAlscript command file for PS/PDF output
[ ]jp_VYqPMyc.blast.gz2015-04-17 16:58 292KCompressed PSIBLAST output file
[TXT]jp_VYqPMyc.coils.csv2015-04-17 16:58 954 COILS output in CSV format
[ ]jp_VYqPMyc.coilseq.lupas_142015-04-17 16:58 6.5KCOILS output, window length 14
[ ]jp_VYqPMyc.coilseq.lupas_212015-04-17 16:58 6.5KCOILS output, window length 21
[ ]jp_VYqPMyc.coilseq.lupas_282015-04-17 16:58 6.5KCOILS output, window length 28
[ ]jp_VYqPMyc.concise2015-04-17 16:58 139KPrediction: coiled-coil, solvent, alignment
[ ]jp_VYqPMyc.concise.blc2015-04-17 16:58 70KBLC format prediction and alignment data
[ ]jp_VYqPMyc.concise.fasta2015-04-17 16:58 71KPrediction: coiled-coil, solvent, alignment
[ ]jp_VYqPMyc.concise.pdf2015-04-17 16:58 456KPDF prediction and alignment data
[ ]jp_VYqPMyc.concise.ps2015-04-17 16:58 8.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_VYqPMyc.fasta2015-04-17 16:17 169 Input query sequence in FASTA format
[ ]jp_VYqPMyc.full_MSA.fasta2015-04-17 16:58 260KFull MSA before JPred filters in FASTA
[TXT]jp_VYqPMyc.full_MSA.fasta.noGaps.html2015-04-17 16:58 275KFull MSA before JPred filters in FASTA
[TXT]jp_VYqPMyc.full_MSA.fasta.withGaps.html2015-04-17 16:58 1.3MFull MSA before JPred filters in FASTA
[ ]jp_VYqPMyc.hmm2015-04-17 16:58 29KHHMer2 profile of the alignment
[TXT]jp_VYqPMyc.html2015-04-17 16:58 162KHTML prediction and alignment data
[ ]jp_VYqPMyc.input2015-04-17 15:59 161 Raw input data for analysis
[ ]jp_VYqPMyc.jalview2015-04-17 16:58 3.9KJalview annotation file for alignment
[ ]jp_VYqPMyc.jnet2015-04-17 16:58 5.7KJnet secondary structure output
[TXT]jp_VYqPMyc.profile2015-04-17 16:44 25KPSIBLAST profile from alignment
[ ]jp_VYqPMyc.pssm2015-04-17 16:58 33KPSIBLAST PSSM for Jnet
[TXT]jp_VYqPMyc.results.html2016-02-15 12:17 70KJPred results page
[TXT]jp_VYqPMyc.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_VYqPMyc.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_VYqPMyc.seq2015-04-17 15:59 169 Sequence data file
[TXT]jp_VYqPMyc.simple.html2015-04-17 16:58 1.4KBrief HTML: sequence and prediction only
[TXT]jp_VYqPMyc.svg.html2015-04-17 16:59 62KJalview SVG summary of results
[ ]jp_VYqPMyc.tar.gz2015-04-17 16:59 1.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.