JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:25 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1jida_.name2015-04-17 15:22 0 Job name flag file
[ ]jp_e6CHGqw.align2015-04-17 15:24 53KPSIBLAST alignment in FASTA format
[TXT]jp_e6CHGqw.als2015-04-17 15:24 2.0KAlscript command file for PS/PDF output
[ ]jp_e6CHGqw.blast.gz2015-04-17 15:24 217KCompressed PSIBLAST output file
[TXT]jp_e6CHGqw.coils.csv2015-04-17 15:24 714 COILS output in CSV format
[ ]jp_e6CHGqw.coilseq.lupas_142015-04-17 15:24 4.8KCOILS output, window length 14
[ ]jp_e6CHGqw.coilseq.lupas_212015-04-17 15:24 4.8KCOILS output, window length 21
[ ]jp_e6CHGqw.coilseq.lupas_282015-04-17 15:24 4.8KCOILS output, window length 28
[ ]jp_e6CHGqw.concise2015-04-17 15:24 106KPrediction: coiled-coil, solvent, alignment
[ ]jp_e6CHGqw.concise.blc2015-04-17 15:24 54KBLC format prediction and alignment data
[ ]jp_e6CHGqw.concise.fasta2015-04-17 15:24 55KPrediction: coiled-coil, solvent, alignment
[ ]jp_e6CHGqw.concise.pdf2015-04-17 15:24 343KPDF prediction and alignment data
[ ]jp_e6CHGqw.concise.ps2015-04-17 15:24 6.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_e6CHGqw.fasta2015-04-17 15:22 128 Input query sequence in FASTA format
[ ]jp_e6CHGqw.full_MSA.fasta2015-04-17 15:24 264KFull MSA before JPred filters in FASTA
[TXT]jp_e6CHGqw.full_MSA.fasta.noGaps.html2015-04-17 15:24 154KFull MSA before JPred filters in FASTA
[TXT]jp_e6CHGqw.full_MSA.fasta.withGaps.html2015-04-17 15:24 1.2MFull MSA before JPred filters in FASTA
[ ]jp_e6CHGqw.hmm2015-04-17 15:24 21KHHMer2 profile of the alignment
[TXT]jp_e6CHGqw.html2015-04-17 15:24 142KHTML prediction and alignment data
[ ]jp_e6CHGqw.input2015-04-17 15:22 121 Raw input data for analysis
[ ]jp_e6CHGqw.jalview2015-04-17 15:24 3.0KJalview annotation file for alignment
[ ]jp_e6CHGqw.jnet2015-04-17 15:24 4.2KJnet secondary structure output
[TXT]jp_e6CHGqw.profile2015-04-17 15:23 19KPSIBLAST profile from alignment
[ ]jp_e6CHGqw.pssm2015-04-17 15:24 24KPSIBLAST PSSM for Jnet
[TXT]jp_e6CHGqw.results.html2016-02-15 12:17 54KJPred results page
[TXT]jp_e6CHGqw.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_e6CHGqw.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_e6CHGqw.seq2015-04-17 15:22 128 Sequence data file
[TXT]jp_e6CHGqw.simple.html2015-04-17 15:24 1.2KBrief HTML: sequence and prediction only
[TXT]jp_e6CHGqw.svg.html2015-04-17 15:24 46KJalview SVG summary of results
[ ]jp_e6CHGqw.tar.gz2015-04-17 15:25 785KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.