A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 21:22 | 4.7K | JPred server log file |
| README | 2016-02-15 12:17 | 2.1K | Results file descriptions |
| d1k04a_.name | 2015-04-17 19:03 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_XzqcVDS.align | 2015-04-17 21:22 | 10K | PSIBLAST alignment in FASTA format |
| jp_XzqcVDS.als | 2015-04-17 21:22 | 1.8K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_XzqcVDS.blast.gz | 2015-04-17 21:22 | 57K | Compressed PSIBLAST output file |
| jp_XzqcVDS.coils.csv | 2015-04-17 21:22 | 882 | COILS output in CSV format |
| jp_XzqcVDS.coilseq.lupas_14 | 2015-04-17 21:22 | 6.0K | COILS output, window length 14 |
| jp_XzqcVDS.coilseq.lupas_21 | 2015-04-17 21:22 | 6.0K | COILS output, window length 21 |
| jp_XzqcVDS.coilseq.lupas_28 | 2015-04-17 21:22 | 6.0K | COILS output, window length 28 |
| jp_XzqcVDS.concise | 2015-04-17 21:22 | 25K | Prediction: coiled-coil, solvent, alignment |
| jp_XzqcVDS.concise.blc | 2015-04-17 21:22 | 12K | BLC format prediction and alignment data |
| jp_XzqcVDS.concise.fasta | 2015-04-17 21:22 | 11K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_XzqcVDS.concise.pdf | 2015-04-17 21:22 | 78K | PDF prediction and alignment data |
| jp_XzqcVDS.concise.ps | 2015-04-17 21:22 | 1.4M | Prediction: coiled-coil, solvent, alignment |
| jp_XzqcVDS.fasta | 2015-04-17 21:18 | 156 | Input query sequence in FASTA format |
| jp_XzqcVDS.full_MSA.fasta | 2015-04-17 21:22 | 60K | Full MSA before JPred filters in FASTA |
| jp_XzqcVDS.full_MSA.fasta.noGaps.html | 2015-04-17 21:22 | 75K | Full MSA before JPred filters in FASTA |
| jp_XzqcVDS.full_MSA.fasta.withGaps.html | 2015-04-17 21:22 | 259K | Full MSA before JPred filters in FASTA |
| jp_XzqcVDS.hmm | 2015-04-17 21:22 | 27K | HHMer2 profile of the alignment |
| jp_XzqcVDS.html | 2015-04-17 21:22 | 39K | HTML prediction and alignment data |
| jp_XzqcVDS.input | 2015-04-17 19:03 | 149 | Raw input data for analysis |
| jp_XzqcVDS.jalview | 2015-04-17 21:22 | 3.8K | Jalview annotation file for alignment |
| jp_XzqcVDS.jnet | 2015-04-17 21:22 | 5.2K | Jnet secondary structure output |
| jp_XzqcVDS.profile | 2015-04-17 21:21 | 23K | PSIBLAST profile from alignment |
| jp_XzqcVDS.pssm | 2015-04-17 21:22 | 31K | PSIBLAST PSSM for Jnet |
| jp_XzqcVDS.results.html | 2016-02-15 12:17 | 64K | JPred results page |
| jp_XzqcVDS.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_XzqcVDS.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_XzqcVDS.seq | 2015-04-17 19:03 | 156 | Sequence data file |
| jp_XzqcVDS.simple.html | 2015-04-17 21:22 | 1.2K | Brief HTML: sequence and prediction only |
![[TXT]](jp_XzqcVDS.svg.html) | jp_XzqcVDS.svg.html | 2015-04-17 21:22 | 56K | Jalview SVG summary of results |
| jp_XzqcVDS.tar.gz | 2015-04-17 21:22 | 210K | Archive containing complete results |
