JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:26 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1k0ra4.name2015-04-17 18:25 0 Job name flag file
[ ]jp_yrQXnf4.align2015-04-17 20:25 275KPSIBLAST alignment in FASTA format
[TXT]jp_yrQXnf4.als2015-04-17 20:25 4.9KAlscript command file for PS/PDF output
[ ]jp_yrQXnf4.blast.gz2015-04-17 20:24 3.9MCompressed PSIBLAST output file
[TXT]jp_yrQXnf4.coils.csv2015-04-17 20:25 1.9KCOILS output in CSV format
[ ]jp_yrQXnf4.coilseq.lupas_142015-04-17 20:25 14KCOILS output, window length 14
[ ]jp_yrQXnf4.coilseq.lupas_212015-04-17 20:25 14KCOILS output, window length 21
[ ]jp_yrQXnf4.coilseq.lupas_282015-04-17 20:25 14KCOILS output, window length 28
[ ]jp_yrQXnf4.concise2015-04-17 20:25 548KPrediction: coiled-coil, solvent, alignment
[ ]jp_yrQXnf4.concise.blc2015-04-17 20:25 276KBLC format prediction and alignment data
[ ]jp_yrQXnf4.concise.fasta2015-04-17 20:25 278KPrediction: coiled-coil, solvent, alignment
[ ]jp_yrQXnf4.concise.pdf2015-04-17 20:26 1.9MPDF prediction and alignment data
[ ]jp_yrQXnf4.concise.ps2015-04-17 20:25 35MPrediction: coiled-coil, solvent, alignment
[ ]jp_yrQXnf4.fasta2015-04-17 20:18 343 Input query sequence in FASTA format
[ ]jp_yrQXnf4.full_MSA.fasta2015-04-17 20:25 8.0MFull MSA before JPred filters in FASTA
[TXT]jp_yrQXnf4.full_MSA.fasta.noGaps.html2015-04-17 20:26 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_yrQXnf4.full_MSA.fasta.withGaps.html2015-04-17 20:26 22MFull MSA before JPred filters in FASTA
[ ]jp_yrQXnf4.hmm2015-04-17 20:25 61KHHMer2 profile of the alignment
[TXT]jp_yrQXnf4.html2015-04-17 20:25 460KHTML prediction and alignment data
[ ]jp_yrQXnf4.input2015-04-17 18:25 333 Raw input data for analysis
[ ]jp_yrQXnf4.jalview2015-04-17 20:25 7.5KJalview annotation file for alignment
[ ]jp_yrQXnf4.jnet2015-04-17 20:25 12KJnet secondary structure output
[TXT]jp_yrQXnf4.profile2015-04-17 20:23 52KPSIBLAST profile from alignment
[ ]jp_yrQXnf4.pssm2015-04-17 20:25 70KPSIBLAST PSSM for Jnet
[TXT]jp_yrQXnf4.results.html2016-02-15 12:17 139KJPred results page
[TXT]jp_yrQXnf4.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_yrQXnf4.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_yrQXnf4.seq2015-04-17 18:25 343 Sequence data file
[TXT]jp_yrQXnf4.simple.html2015-04-17 20:25 2.1KBrief HTML: sequence and prediction only
[TXT]jp_yrQXnf4.svg.html2015-04-17 20:26 131KJalview SVG summary of results
[ ]jp_yrQXnf4.tar.gz2015-04-17 20:26 8.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.