JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:23 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1k4za_.name2015-04-17 18:26 0 Job name flag file
[ ]jp_cyIK7CA.align2015-04-17 20:22 46KPSIBLAST alignment in FASTA format
[TXT]jp_cyIK7CA.als2015-04-17 20:23 3.7KAlscript command file for PS/PDF output
[ ]jp_cyIK7CA.blast.gz2015-04-17 20:22 275KCompressed PSIBLAST output file
[TXT]jp_cyIK7CA.coils.csv2015-04-17 20:22 972 COILS output in CSV format
[ ]jp_cyIK7CA.coilseq.lupas_142015-04-17 20:22 6.6KCOILS output, window length 14
[ ]jp_cyIK7CA.coilseq.lupas_212015-04-17 20:22 6.6KCOILS output, window length 21
[ ]jp_cyIK7CA.coilseq.lupas_282015-04-17 20:22 6.6KCOILS output, window length 28
[ ]jp_cyIK7CA.concise2015-04-17 20:22 96KPrediction: coiled-coil, solvent, alignment
[ ]jp_cyIK7CA.concise.blc2015-04-17 20:23 48KBLC format prediction and alignment data
[ ]jp_cyIK7CA.concise.fasta2015-04-17 20:23 48KPrediction: coiled-coil, solvent, alignment
[ ]jp_cyIK7CA.concise.pdf2015-04-17 20:23 327KPDF prediction and alignment data
[ ]jp_cyIK7CA.concise.ps2015-04-17 20:23 5.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_cyIK7CA.fasta2015-04-17 20:18 172 Input query sequence in FASTA format
[ ]jp_cyIK7CA.full_MSA.fasta2015-04-17 20:22 368KFull MSA before JPred filters in FASTA
[TXT]jp_cyIK7CA.full_MSA.fasta.noGaps.html2015-04-17 20:23 177KFull MSA before JPred filters in FASTA
[TXT]jp_cyIK7CA.full_MSA.fasta.withGaps.html2015-04-17 20:23 1.6MFull MSA before JPred filters in FASTA
[ ]jp_cyIK7CA.hmm2015-04-17 20:22 29KHHMer2 profile of the alignment
[TXT]jp_cyIK7CA.html2015-04-17 20:22 114KHTML prediction and alignment data
[ ]jp_cyIK7CA.input2015-04-17 18:26 164 Raw input data for analysis
[ ]jp_cyIK7CA.jalview2015-04-17 20:23 4.0KJalview annotation file for alignment
[ ]jp_cyIK7CA.jnet2015-04-17 20:22 5.8KJnet secondary structure output
[TXT]jp_cyIK7CA.profile2015-04-17 20:21 25KPSIBLAST profile from alignment
[ ]jp_cyIK7CA.pssm2015-04-17 20:22 34KPSIBLAST PSSM for Jnet
[TXT]jp_cyIK7CA.results.html2016-02-15 12:17 73KJPred results page
[TXT]jp_cyIK7CA.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_cyIK7CA.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_cyIK7CA.seq2015-04-17 18:26 172 Sequence data file
[TXT]jp_cyIK7CA.simple.html2015-04-17 20:22 1.6KBrief HTML: sequence and prediction only
[TXT]jp_cyIK7CA.svg.html2015-04-17 20:23 65KJalview SVG summary of results
[ ]jp_cyIK7CA.tar.gz2015-04-17 20:23 858KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.