JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:27 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1k5ca_.name2015-04-17 17:50 0 Job name flag file
[ ]jp_DBG18gF.align2015-04-17 19:26 340KPSIBLAST alignment in FASTA format
[TXT]jp_DBG18gF.als2015-04-17 19:26 5.1KAlscript command file for PS/PDF output
[ ]jp_DBG18gF.blast.gz2015-04-17 19:24 12MCompressed PSIBLAST output file
[TXT]jp_DBG18gF.coils.csv2015-04-17 19:26 2.0KCOILS output in CSV format
[ ]jp_DBG18gF.coilseq.lupas_142015-04-17 19:26 14KCOILS output, window length 14
[ ]jp_DBG18gF.coilseq.lupas_212015-04-17 19:26 14KCOILS output, window length 21
[ ]jp_DBG18gF.coilseq.lupas_282015-04-17 19:26 14KCOILS output, window length 28
[ ]jp_DBG18gF.concise2015-04-17 19:26 676KPrediction: coiled-coil, solvent, alignment
[ ]jp_DBG18gF.concise.blc2015-04-17 19:26 341KBLC format prediction and alignment data
[ ]jp_DBG18gF.concise.fasta2015-04-17 19:26 344KPrediction: coiled-coil, solvent, alignment
[ ]jp_DBG18gF.concise.pdf2015-04-17 19:26 2.4MPDF prediction and alignment data
[ ]jp_DBG18gF.concise.ps2015-04-17 19:26 43MPrediction: coiled-coil, solvent, alignment
[ ]jp_DBG18gF.fasta2015-04-17 19:18 350 Input query sequence in FASTA format
[ ]jp_DBG18gF.full_MSA.fasta2015-04-17 19:25 29MFull MSA before JPred filters in FASTA
[TXT]jp_DBG18gF.full_MSA.fasta.noGaps.html2015-04-17 19:27 2.0MFull MSA before JPred filters in FASTA
[TXT]jp_DBG18gF.full_MSA.fasta.withGaps.html2015-04-17 19:27 64MFull MSA before JPred filters in FASTA
[ ]jp_DBG18gF.hmm2015-04-17 19:26 62KHHMer2 profile of the alignment
[TXT]jp_DBG18gF.html2015-04-17 19:26 556KHTML prediction and alignment data
[ ]jp_DBG18gF.input2015-04-17 17:50 340 Raw input data for analysis
[ ]jp_DBG18gF.jalview2015-04-17 19:26 7.5KJalview annotation file for alignment
[ ]jp_DBG18gF.jnet2015-04-17 19:26 12KJnet secondary structure output
[TXT]jp_DBG18gF.profile2015-04-17 19:21 53KPSIBLAST profile from alignment
[ ]jp_DBG18gF.pssm2015-04-17 19:26 72KPSIBLAST PSSM for Jnet
[TXT]jp_DBG18gF.results.html2016-02-15 12:17 140KJPred results page
[TXT]jp_DBG18gF.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_DBG18gF.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_DBG18gF.seq2015-04-17 17:50 350 Sequence data file
[TXT]jp_DBG18gF.simple.html2015-04-17 19:26 2.2KBrief HTML: sequence and prediction only
[TXT]jp_DBG18gF.svg.html2015-04-17 19:27 132KJalview SVG summary of results
[ ]jp_DBG18gF.tar.gz2015-04-17 19:27 22MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.