JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]d1k6ka_.name2015-04-17 16:37 0 Job name flag file
[ ]jp_azszHUc.input2015-04-17 16:37 149 Raw input data for analysis
[ ]jp_azszHUc.fasta2015-04-17 17:19 156 Input query sequence in FASTA format
[ ]jp_azszHUc.seq2015-04-17 16:37 156 Sequence data file
[TXT]jp_azszHUc.coils.csv2015-04-17 17:30 882 COILS output in CSV format
[TXT]jp_azszHUc.simple.html2015-04-17 17:30 1.3KBrief HTML: sequence and prediction only
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]jp_azszHUc.als2015-04-17 17:30 2.4KAlscript command file for PS/PDF output
[ ]jp_azszHUc.jalview2015-04-17 17:30 3.7KJalview annotation file for alignment
[TXT]LOG2015-04-17 17:31 4.7KJPred server log file
[ ]jp_azszHUc.jnet2015-04-17 17:30 5.2KJnet secondary structure output
[ ]jp_azszHUc.coilseq.lupas_142015-04-17 17:30 6.0KCOILS output, window length 14
[ ]jp_azszHUc.coilseq.lupas_212015-04-17 17:30 6.0KCOILS output, window length 21
[ ]jp_azszHUc.coilseq.lupas_282015-04-17 17:30 6.0KCOILS output, window length 28
[TXT]jp_azszHUc.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_azszHUc.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[TXT]jp_azszHUc.profile2015-04-17 17:26 23KPSIBLAST profile from alignment
[ ]jp_azszHUc.hmm2015-04-17 17:30 27KHHMer2 profile of the alignment
[ ]jp_azszHUc.pssm2015-04-17 17:30 31KPSIBLAST PSSM for Jnet
[TXT]jp_azszHUc.svg.html2015-04-17 17:31 59KJalview SVG summary of results
[TXT]jp_azszHUc.results.html2016-02-15 12:17 67KJPred results page
[ ]jp_azszHUc.align2015-04-17 17:30 128KPSIBLAST alignment in FASTA format
[ ]jp_azszHUc.concise.blc2015-04-17 17:30 129KBLC format prediction and alignment data
[ ]jp_azszHUc.concise.fasta2015-04-17 17:30 130KPrediction: coiled-coil, solvent, alignment
[ ]jp_azszHUc.concise2015-04-17 17:30 252KPrediction: coiled-coil, solvent, alignment
[TXT]jp_azszHUc.html2015-04-17 17:30 300KHTML prediction and alignment data
[ ]jp_azszHUc.concise.pdf2015-04-17 17:30 890KPDF prediction and alignment data
[TXT]jp_azszHUc.full_MSA.fasta.noGaps.html2015-04-17 17:31 2.1MFull MSA before JPred filters in FASTA
[ ]jp_azszHUc.blast.gz2015-04-17 17:28 3.4MCompressed PSIBLAST output file
[ ]jp_azszHUc.tar.gz2015-04-17 17:31 8.4MArchive containing complete results
[ ]jp_azszHUc.full_MSA.fasta2015-04-17 17:29 14MFull MSA before JPred filters in FASTA
[ ]jp_azszHUc.concise.ps2015-04-17 17:30 15MPrediction: coiled-coil, solvent, alignment
[TXT]jp_azszHUc.full_MSA.fasta.withGaps.html2015-04-17 17:31 40MFull MSA before JPred filters in FASTA
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.