JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:25 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1k7ca_.name2015-04-17 19:03 0 Job name flag file
[ ]jp_3m0bcRt.align2015-04-17 21:24 264KPSIBLAST alignment in FASTA format
[TXT]jp_3m0bcRt.als2015-04-17 21:24 3.2KAlscript command file for PS/PDF output
[ ]jp_3m0bcRt.blast.gz2015-04-17 21:22 6.8MCompressed PSIBLAST output file
[TXT]jp_3m0bcRt.coils.csv2015-04-17 21:24 1.4KCOILS output in CSV format
[ ]jp_3m0bcRt.coilseq.lupas_142015-04-17 21:24 9.8KCOILS output, window length 14
[ ]jp_3m0bcRt.coilseq.lupas_212015-04-17 21:24 9.8KCOILS output, window length 21
[ ]jp_3m0bcRt.coilseq.lupas_282015-04-17 21:24 9.8KCOILS output, window length 28
[ ]jp_3m0bcRt.concise2015-04-17 21:24 520KPrediction: coiled-coil, solvent, alignment
[ ]jp_3m0bcRt.concise.blc2015-04-17 21:24 264KBLC format prediction and alignment data
[ ]jp_3m0bcRt.concise.fasta2015-04-17 21:24 267KPrediction: coiled-coil, solvent, alignment
[ ]jp_3m0bcRt.concise.pdf2015-04-17 21:24 1.7MPDF prediction and alignment data
[ ]jp_3m0bcRt.concise.ps2015-04-17 21:24 32MPrediction: coiled-coil, solvent, alignment
[ ]jp_3m0bcRt.fasta2015-04-17 21:19 249 Input query sequence in FASTA format
[ ]jp_3m0bcRt.full_MSA.fasta2015-04-17 21:23 26MFull MSA before JPred filters in FASTA
[TXT]jp_3m0bcRt.full_MSA.fasta.noGaps.html2015-04-17 21:25 2.4MFull MSA before JPred filters in FASTA
[TXT]jp_3m0bcRt.full_MSA.fasta.withGaps.html2015-04-17 21:25 63MFull MSA before JPred filters in FASTA
[ ]jp_3m0bcRt.hmm2015-04-17 21:24 44KHHMer2 profile of the alignment
[TXT]jp_3m0bcRt.html2015-04-17 21:24 486KHTML prediction and alignment data
[ ]jp_3m0bcRt.input2015-04-17 19:03 240 Raw input data for analysis
[ ]jp_3m0bcRt.jalview2015-04-17 21:24 5.4KJalview annotation file for alignment
[ ]jp_3m0bcRt.jnet2015-04-17 21:24 8.5KJnet secondary structure output
[TXT]jp_3m0bcRt.profile2015-04-17 21:21 37KPSIBLAST profile from alignment
[ ]jp_3m0bcRt.pssm2015-04-17 21:24 50KPSIBLAST PSSM for Jnet
[TXT]jp_3m0bcRt.results.html2016-02-15 12:17 100KJPred results page
[TXT]jp_3m0bcRt.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_3m0bcRt.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_3m0bcRt.seq2015-04-17 19:03 249 Sequence data file
[TXT]jp_3m0bcRt.simple.html2015-04-17 21:24 1.6KBrief HTML: sequence and prediction only
[TXT]jp_3m0bcRt.svg.html2015-04-17 21:25 92KJalview SVG summary of results
[ ]jp_3m0bcRt.tar.gz2015-04-17 21:25 15MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.