A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 16:12 | 4.7K | JPred server log file |
| README | 2016-02-15 12:17 | 2.1K | Results file descriptions |
| d1k8kd1.name | 2015-04-17 15:23 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_ujaxDte.align | 2015-04-17 16:11 | 32K | PSIBLAST alignment in FASTA format |
| jp_ujaxDte.als | 2015-04-17 16:11 | 2.3K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_ujaxDte.blast.gz | 2015-04-17 16:11 | 111K | Compressed PSIBLAST output file |
| jp_ujaxDte.coils.csv | 2015-04-17 16:11 | 750 | COILS output in CSV format |
| jp_ujaxDte.coilseq.lupas_14 | 2015-04-17 16:11 | 5.0K | COILS output, window length 14 |
| jp_ujaxDte.coilseq.lupas_21 | 2015-04-17 16:11 | 5.0K | COILS output, window length 21 |
| jp_ujaxDte.coilseq.lupas_28 | 2015-04-17 16:11 | 5.0K | COILS output, window length 28 |
| jp_ujaxDte.concise | 2015-04-17 16:11 | 66K | Prediction: coiled-coil, solvent, alignment |
| jp_ujaxDte.concise.blc | 2015-04-17 16:11 | 33K | BLC format prediction and alignment data |
| jp_ujaxDte.concise.fasta | 2015-04-17 16:11 | 33K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_ujaxDte.concise.pdf | 2015-04-17 16:12 | 219K | PDF prediction and alignment data |
| jp_ujaxDte.concise.ps | 2015-04-17 16:11 | 3.9M | Prediction: coiled-coil, solvent, alignment |
| jp_ujaxDte.fasta | 2015-04-17 15:23 | 134 | Input query sequence in FASTA format |
| jp_ujaxDte.full_MSA.fasta | 2015-04-17 16:11 | 149K | Full MSA before JPred filters in FASTA |
| jp_ujaxDte.full_MSA.fasta.noGaps.html | 2015-04-17 16:12 | 91K | Full MSA before JPred filters in FASTA |
| jp_ujaxDte.full_MSA.fasta.withGaps.html | 2015-04-17 16:12 | 739K | Full MSA before JPred filters in FASTA |
| jp_ujaxDte.hmm | 2015-04-17 16:11 | 23K | HHMer2 profile of the alignment |
| jp_ujaxDte.html | 2015-04-17 16:11 | 89K | HTML prediction and alignment data |
| jp_ujaxDte.input | 2015-04-17 15:23 | 127 | Raw input data for analysis |
| jp_ujaxDte.jalview | 2015-04-17 16:11 | 3.2K | Jalview annotation file for alignment |
| jp_ujaxDte.jnet | 2015-04-17 16:11 | 4.4K | Jnet secondary structure output |
| jp_ujaxDte.profile | 2015-04-17 15:54 | 19K | PSIBLAST profile from alignment |
| jp_ujaxDte.pssm | 2015-04-17 16:11 | 26K | PSIBLAST PSSM for Jnet |
| jp_ujaxDte.results.html | 2016-02-15 12:17 | 57K | JPred results page |
| jp_ujaxDte.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_ujaxDte.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_ujaxDte.seq | 2015-04-17 15:23 | 134 | Sequence data file |
| jp_ujaxDte.simple.html | 2015-04-17 16:11 | 1.3K | Brief HTML: sequence and prediction only |
![[TXT]](jp_ujaxDte.svg.html) | jp_ujaxDte.svg.html | 2015-04-17 16:12 | 49K | Jalview SVG summary of results |
| jp_ujaxDte.tar.gz | 2015-04-17 16:12 | 473K | Archive containing complete results |
