JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:32 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1ka1a_.name2015-04-17 16:37 0 Job name flag file
[ ]jp_Y_XhgO4.align2015-04-17 17:31 343KPSIBLAST alignment in FASTA format
[TXT]jp_Y_XhgO4.als2015-04-17 17:31 4.5KAlscript command file for PS/PDF output
[ ]jp_Y_XhgO4.blast.gz2015-04-17 17:29 14MCompressed PSIBLAST output file
[TXT]jp_Y_XhgO4.coils.csv2015-04-17 17:31 2.1KCOILS output in CSV format
[ ]jp_Y_XhgO4.coilseq.lupas_142015-04-17 17:31 15KCOILS output, window length 14
[ ]jp_Y_XhgO4.coilseq.lupas_212015-04-17 17:31 15KCOILS output, window length 21
[ ]jp_Y_XhgO4.coilseq.lupas_282015-04-17 17:31 15KCOILS output, window length 28
[ ]jp_Y_XhgO4.concise2015-04-17 17:31 683KPrediction: coiled-coil, solvent, alignment
[ ]jp_Y_XhgO4.concise.blc2015-04-17 17:31 344KBLC format prediction and alignment data
[ ]jp_Y_XhgO4.concise.fasta2015-04-17 17:31 347KPrediction: coiled-coil, solvent, alignment
[ ]jp_Y_XhgO4.concise.pdf2015-04-17 17:32 2.2MPDF prediction and alignment data
[ ]jp_Y_XhgO4.concise.ps2015-04-17 17:31 41MPrediction: coiled-coil, solvent, alignment
[ ]jp_Y_XhgO4.fasta2015-04-17 17:20 371 Input query sequence in FASTA format
[ ]jp_Y_XhgO4.full_MSA.fasta2015-04-17 17:30 27MFull MSA before JPred filters in FASTA
[TXT]jp_Y_XhgO4.full_MSA.fasta.noGaps.html2015-04-17 17:32 4.1MFull MSA before JPred filters in FASTA
[TXT]jp_Y_XhgO4.full_MSA.fasta.withGaps.html2015-04-17 17:32 92MFull MSA before JPred filters in FASTA
[ ]jp_Y_XhgO4.hmm2015-04-17 17:31 66KHHMer2 profile of the alignment
[TXT]jp_Y_XhgO4.html2015-04-17 17:31 549KHTML prediction and alignment data
[ ]jp_Y_XhgO4.input2015-04-17 16:37 361 Raw input data for analysis
[ ]jp_Y_XhgO4.jalview2015-04-17 17:31 7.8KJalview annotation file for alignment
[ ]jp_Y_XhgO4.jnet2015-04-17 17:31 13KJnet secondary structure output
[TXT]jp_Y_XhgO4.profile2015-04-17 17:27 57KPSIBLAST profile from alignment
[ ]jp_Y_XhgO4.pssm2015-04-17 17:31 76KPSIBLAST PSSM for Jnet
[TXT]jp_Y_XhgO4.results.html2016-02-15 12:17 148KJPred results page
[TXT]jp_Y_XhgO4.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Y_XhgO4.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Y_XhgO4.seq2015-04-17 16:37 371 Sequence data file
[TXT]jp_Y_XhgO4.simple.html2015-04-17 17:31 2.1KBrief HTML: sequence and prediction only
[TXT]jp_Y_XhgO4.svg.html2015-04-17 17:32 140KJalview SVG summary of results
[ ]jp_Y_XhgO4.tar.gz2015-04-17 17:32 26MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.