JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:34 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1kapp1.name2015-04-17 16:00 0 Job name flag file
[ ]jp_LCKANse.align2015-04-17 16:32 236KPSIBLAST alignment in FASTA format
[TXT]jp_LCKANse.als2015-04-17 16:32 4.5KAlscript command file for PS/PDF output
[ ]jp_LCKANse.blast.gz2015-04-17 16:29 21MCompressed PSIBLAST output file
[TXT]jp_LCKANse.coils.csv2015-04-17 16:32 1.3KCOILS output in CSV format
[ ]jp_LCKANse.coilseq.lupas_142015-04-17 16:32 9.4KCOILS output, window length 14
[ ]jp_LCKANse.coilseq.lupas_212015-04-17 16:32 9.4KCOILS output, window length 21
[ ]jp_LCKANse.coilseq.lupas_282015-04-17 16:32 9.4KCOILS output, window length 28
[ ]jp_LCKANse.concise2015-04-17 16:32 465KPrediction: coiled-coil, solvent, alignment
[ ]jp_LCKANse.concise.blc2015-04-17 16:32 236KBLC format prediction and alignment data
[ ]jp_LCKANse.concise.fasta2015-04-17 16:32 239KPrediction: coiled-coil, solvent, alignment
[ ]jp_LCKANse.concise.pdf2015-04-17 16:33 1.3MPDF prediction and alignment data
[ ]jp_LCKANse.concise.ps2015-04-17 16:33 28MPrediction: coiled-coil, solvent, alignment
[ ]jp_LCKANse.fasta2015-04-17 16:18 240 Input query sequence in FASTA format
[ ]jp_LCKANse.full_MSA.fasta2015-04-17 16:31 56MFull MSA before JPred filters in FASTA
[TXT]jp_LCKANse.full_MSA.fasta.noGaps.html2015-04-17 16:34 4.7MFull MSA before JPred filters in FASTA
[TXT]jp_LCKANse.full_MSA.fasta.withGaps.html2015-04-17 16:34 127MFull MSA before JPred filters in FASTA
[ ]jp_LCKANse.hmm2015-04-17 16:32 42KHHMer2 profile of the alignment
[TXT]jp_LCKANse.html2015-04-17 16:32 442KHTML prediction and alignment data
[ ]jp_LCKANse.input2015-04-17 16:00 231 Raw input data for analysis
[ ]jp_LCKANse.jalview2015-04-17 16:32 5.2KJalview annotation file for alignment
[ ]jp_LCKANse.jnet2015-04-17 16:32 8.2KJnet secondary structure output
[TXT]jp_LCKANse.profile2015-04-17 16:25 36KPSIBLAST profile from alignment
[ ]jp_LCKANse.pssm2015-04-17 16:32 48KPSIBLAST PSSM for Jnet
[TXT]jp_LCKANse.results.html2016-02-15 12:17 99KJPred results page
[TXT]jp_LCKANse.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_LCKANse.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_LCKANse.seq2015-04-17 16:00 240 Sequence data file
[TXT]jp_LCKANse.simple.html2015-04-17 16:32 1.9KBrief HTML: sequence and prediction only
[TXT]jp_LCKANse.svg.html2015-04-17 16:34 91KJalview SVG summary of results
[ ]jp_LCKANse.tar.gz2015-04-17 16:34 34MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.