JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:36 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1kbla2.name2015-04-17 15:50 0 Job name flag file
[ ]jp_yj1SCnd.align2015-04-17 16:35 122KPSIBLAST alignment in FASTA format
[TXT]jp_yj1SCnd.als2015-04-17 16:35 3.1KAlscript command file for PS/PDF output
[ ]jp_yj1SCnd.blast.gz2015-04-17 16:34 2.4MCompressed PSIBLAST output file
[TXT]jp_yj1SCnd.coils.csv2015-04-17 16:35 828 COILS output in CSV format
[ ]jp_yj1SCnd.coilseq.lupas_142015-04-17 16:35 5.6KCOILS output, window length 14
[ ]jp_yj1SCnd.coilseq.lupas_212015-04-17 16:35 5.6KCOILS output, window length 21
[ ]jp_yj1SCnd.coilseq.lupas_282015-04-17 16:35 5.6KCOILS output, window length 28
[ ]jp_yj1SCnd.concise2015-04-17 16:35 238KPrediction: coiled-coil, solvent, alignment
[ ]jp_yj1SCnd.concise.blc2015-04-17 16:35 122KBLC format prediction and alignment data
[ ]jp_yj1SCnd.concise.fasta2015-04-17 16:35 123KPrediction: coiled-coil, solvent, alignment
[ ]jp_yj1SCnd.concise.pdf2015-04-17 16:35 751KPDF prediction and alignment data
[ ]jp_yj1SCnd.concise.ps2015-04-17 16:35 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_yj1SCnd.fasta2015-04-17 16:05 147 Input query sequence in FASTA format
[ ]jp_yj1SCnd.full_MSA.fasta2015-04-17 16:35 3.4MFull MSA before JPred filters in FASTA
[TXT]jp_yj1SCnd.full_MSA.fasta.noGaps.html2015-04-17 16:36 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_yj1SCnd.full_MSA.fasta.withGaps.html2015-04-17 16:36 17MFull MSA before JPred filters in FASTA
[ ]jp_yj1SCnd.hmm2015-04-17 16:35 25KHHMer2 profile of the alignment
[TXT]jp_yj1SCnd.html2015-04-17 16:35 291KHTML prediction and alignment data
[ ]jp_yj1SCnd.input2015-04-17 15:50 140 Raw input data for analysis
[ ]jp_yj1SCnd.jalview2015-04-17 16:35 3.5KJalview annotation file for alignment
[ ]jp_yj1SCnd.jnet2015-04-17 16:35 4.9KJnet secondary structure output
[TXT]jp_yj1SCnd.profile2015-04-17 16:25 22KPSIBLAST profile from alignment
[ ]jp_yj1SCnd.pssm2015-04-17 16:35 29KPSIBLAST PSSM for Jnet
[TXT]jp_yj1SCnd.results.html2016-02-15 12:17 65KJPred results page
[TXT]jp_yj1SCnd.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_yj1SCnd.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_yj1SCnd.seq2015-04-17 15:50 147 Sequence data file
[TXT]jp_yj1SCnd.simple.html2015-04-17 16:35 1.5KBrief HTML: sequence and prediction only
[TXT]jp_yj1SCnd.svg.html2015-04-17 16:36 57KJalview SVG summary of results
[ ]jp_yj1SCnd.tar.gz2015-04-17 16:36 4.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.