A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 17:38 | 4.7K | JPred server log file |
| README | 2016-02-15 12:17 | 2.1K | Results file descriptions |
| d1kgsa1.name | 2015-04-17 16:37 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_SuyfsoD.align | 2015-04-17 17:38 | 92K | PSIBLAST alignment in FASTA format |
| jp_SuyfsoD.als | 2015-04-17 17:38 | 2.5K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_SuyfsoD.blast.gz | 2015-04-17 17:37 | 3.7M | Compressed PSIBLAST output file |
| jp_SuyfsoD.coils.csv | 2015-04-17 17:38 | 612 | COILS output in CSV format |
| jp_SuyfsoD.coilseq.lupas_14 | 2015-04-17 17:38 | 4.1K | COILS output, window length 14 |
| jp_SuyfsoD.coilseq.lupas_21 | 2015-04-17 17:38 | 4.1K | COILS output, window length 21 |
| jp_SuyfsoD.coilseq.lupas_28 | 2015-04-17 17:38 | 4.1K | COILS output, window length 28 |
| jp_SuyfsoD.concise | 2015-04-17 17:38 | 178K | Prediction: coiled-coil, solvent, alignment |
| jp_SuyfsoD.concise.blc | 2015-04-17 17:38 | 92K | BLC format prediction and alignment data |
| jp_SuyfsoD.concise.fasta | 2015-04-17 17:38 | 93K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_SuyfsoD.concise.pdf | 2015-04-17 17:38 | 618K | PDF prediction and alignment data |
| jp_SuyfsoD.concise.ps | 2015-04-17 17:38 | 11M | Prediction: coiled-coil, solvent, alignment |
| jp_SuyfsoD.fasta | 2015-04-17 17:20 | 111 | Input query sequence in FASTA format |
| jp_SuyfsoD.full_MSA.fasta | 2015-04-17 17:38 | 3.8M | Full MSA before JPred filters in FASTA |
| jp_SuyfsoD.full_MSA.fasta.noGaps.html | 2015-04-17 17:38 | 2.2M | Full MSA before JPred filters in FASTA |
| jp_SuyfsoD.full_MSA.fasta.withGaps.html | 2015-04-17 17:38 | 16M | Full MSA before JPred filters in FASTA |
| jp_SuyfsoD.hmm | 2015-04-17 17:38 | 18K | HHMer2 profile of the alignment |
| jp_SuyfsoD.html | 2015-04-17 17:38 | 257K | HTML prediction and alignment data |
| jp_SuyfsoD.input | 2015-04-17 16:37 | 104 | Raw input data for analysis |
| jp_SuyfsoD.jalview | 2015-04-17 17:38 | 2.8K | Jalview annotation file for alignment |
| jp_SuyfsoD.jnet | 2015-04-17 17:38 | 3.6K | Jnet secondary structure output |
| jp_SuyfsoD.profile | 2015-04-17 17:36 | 16K | PSIBLAST profile from alignment |
| jp_SuyfsoD.pssm | 2015-04-17 17:38 | 21K | PSIBLAST PSSM for Jnet |
| jp_SuyfsoD.results.html | 2016-02-15 12:17 | 50K | JPred results page |
| jp_SuyfsoD.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_SuyfsoD.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_SuyfsoD.seq | 2015-04-17 16:37 | 111 | Sequence data file |
| jp_SuyfsoD.simple.html | 2015-04-17 17:38 | 1.3K | Brief HTML: sequence and prediction only |
![[TXT]](jp_SuyfsoD.svg.html) | jp_SuyfsoD.svg.html | 2015-04-17 17:38 | 42K | Jalview SVG summary of results |
| jp_SuyfsoD.tar.gz | 2015-04-17 17:38 | 6.8M | Archive containing complete results |
